atbroman/Rolemodel
Gene-set analysis via MFA-ILP

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Gene-set analysis via MFA-ILP

bpMCMC with bipartite graph
bpTableWrapper for MCMC with bipartite graph
estPEstimate p using 'mgsa'
gs2edgeCreate Gene set matrices
I2edgeCreate edge data frame from gene - geneset indicator matrix
ILPPerform an integer linear programming
optimalRMExtract wholes in the smaller incidence matrix
sequentialRMThe sequential approach
shrinkRMShrink the size of the incidence matrix
subRMTrim the incidence matrix
t2dExample data set
atbroman/Rolemodel documentation built on May 10, 2019, 2:08 p.m.

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