bp | MCMC with bipartite graph |
bpTable | Wrapper for MCMC with bipartite graph |
estP | Estimate p using 'mgsa' |
gs2edge | Create Gene set matrices |
I2edge | Create edge data frame from gene - geneset indicator matrix |
ILP | Perform an integer linear programming |
optimalRM | Extract wholes in the smaller incidence matrix |
sequentialRM | The sequential approach |
shrinkRM | Shrink the size of the incidence matrix |
subRM | Trim the incidence matrix |
t2d | Example data set |
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