npc: Spearman correlations between viral gene EBNA1 and human...

In atbroman/allez: Random-set calibration of gene-set statistics

Description

Spearman correlations between the viral gene EBNA1 and all 54675 host genes (from Sengupta et al 2006) in a study of NasoPharyngeal Carcinoma

Preliminary data analysis in Sengupta et al indicated something interesting about host genes that are negatively correlated with the virus.

Usage

data(npc)

Format

The format is: Named num [1:54675] -0.00806 0.37339 -0.41371 -0.27903 -0.22782 ... - attr(*, "names")= chr [1:54675] "1007_s_at" "1053_at" "117_at" "121_at" ...

Examples

data(npc)

## Not run: 
scores  <- (1/2)*sqrt(28)*log((1-npc)/(1+npc))
npc.go <- allez(scores, lib="hgu133plus2")

## End(Not run)

atbroman/allez documentation built on May 10, 2019, 2:08 p.m.