se.DM: se.DM Function to convert se object to LME4 input.

Description Usage Arguments Details Value Author(s) References Examples

Description

This function generates LME4 input.

Usage

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se.DM(se, weightByLL = TRUE)

Arguments

se

An se object containing FPKM values and at least one annotation column.

weightByLL

Logical, weigh by log likelihood score.

Details

This function converts se object.

Value

Returns LME4 input.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

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data(hmel.se)
f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5)
dm <- se.DM(f_se)

avastermark19/doseR_0.99.7 documentation built on May 29, 2019, 8:30 a.m.