simpleFilter: simpleFilter Function to filter expression data of an se...
In avastermark19/doseR_0.99.7: doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
simpleFilter is a filtering function used to remove rows
(genes) of various expression data.
Usage
1
2
Arguments
se
An se object.
mean_cutoff
The lower cutoff, using mean.
min_cutoff
The cutoff, expressed as a minimum acceptable value.
median_cutoff
The cutoff, using a median value.
counts
Boolean, use raw counts data (default) or RPKM.
Details
This function filters the expression of the supplied se obj.
Value
Returns a filtered se object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1
data(hmel.se) ; f_se <- simpleFilter(se, mean_cutoff=0.5)
avastermark19/doseR_0.99.7 documentation built on May 29, 2019, 8:30 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
simpleFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1 2 |
Arguments
se |
An se object. |
mean_cutoff |
The lower cutoff, using mean. |
min_cutoff |
The cutoff, expressed as a minimum acceptable value. |
median_cutoff |
The cutoff, using a median value. |
counts |
Boolean, use raw counts data (default) or RPKM. |
Details
This function filters the expression of the supplied se obj.
Value
Returns a filtered se object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1 | data(hmel.se) ; f_se <- simpleFilter(se, mean_cutoff=0.5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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