Support R-:package: for paper Veríssimo et al. (2020)
This package contains all methods and workflow necessary to reproduce the results in the paper using the vignettes in the folder with the same name:
Analysis.Rmd
: Choosing an alpha value and a target number of
variables, it compares between Network-based models and classical
ElasticNet approach. It also performs a stability study on the
selected variables.OptimalVariableSize.Rmd
: Performs cross-validation on multiple
values of alpha
and shows Kaplan-Meier estimators and Concordance
C-Index values.Normalization_tests.Rmd
: Test different methods to normalize the
data and then performs cross-validation to help decide on which to
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