balanced.cv.folds | Create balanced folds for cross validation |
balanced.cv.folds.from.vector | Create balanced folds for cross validation |
balanced.train.and.test | Get a balanced test and train dataset |
balanced.train.and.test.from.vector | Get a balanced test and train dataset |
base.dir | change base.dir for run.cache |
build.function.digest | Build digest of function from the actual code |
cache.compression | change cache.compression for run.cache |
calculate.result | Calculate/load result and save if necessary |
ccds.genes.internal | Download coding genes from CCDS |
coding.genes | Retrive coding genes from known databases |
coding.genes.ensembl | Ensembl coding genes, local function |
create.directory.for.cache | Create directories for cache |
curl.workaround | Workaround for bug with curl when fetching specific ensembl... |
digest.cache | Default digest method |
draw.cov.matrix | Plot covariance heatmap from matrix |
gen.synth.xdata | Generate xdata matrix with pre-determined covariance |
getBM.internal | Internal call to biomaRt::getBM |
getHsapiensMart.internal | Get hsapiens mart from biomaRt |
join.ensembl.and.ccds | Join genes from ensembl and ccds in a single table |
listEnsemblMirrors | Internal function to list mirrors |
loose.rock | loose.rock: compilation of data science functions |
loose.rock.options | Constants for 'loose.rock' package |
multiplot | Multiple plot |
my.colors | Custom pallete of colors |
my.symbols | Custom pallete of symbols in plots |
proper | Capitalizes all words in string |
release_questions | Questions to ask when calling devtools::release() |
run.cache | Run function and save cache |
run.cache-function-method | Run function and save cache |
save.run.cache | Saving the cache |
search.genes.internal | Search genes in biomaRt |
show.message | Show messages option in run.cache |
tempdir.cache | Temporary directory for runCache |
write.readme | Write a file in run-cache directory to explain the origin |
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