getBM.internal: Internal call to biomaRt::getBM

In averissimo/loose.rock: Tools for Survival Analysis and Data Science

Internal call to biomaRt::getBM

Description

Depending on R version (<4.0.0) then it needs to have a special call

Usage

getBM.internal(...)

Arguments

...	see biomaRt::getBM as all parameters are the same

Value

result of the biomaRt::getBM call

See Also

biomaRt::getBM

Examples

  mart <- loose.rock:::getHsapiensMart.internal()
  res <- loose.rock:::getBM.internal(
    attributes = c('ensembl_gene_id','external_gene_name'),
    filters    = 'biotype',
    values     = c('protein_coding'),
    mart       = mart,
    useCache   = FALSE
  )
  nrow(res)
  head(res)

averissimo/loose.rock documentation built on Dec. 8, 2022, 11:53 p.m.