Files in avucoh/DIVE
Data Integration and Visual Exploration
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/docker-publish.yml
.gitignore
DESCRIPTION
DIVE.Rproj
Dockerfile
NAMESPACE
R/DIVE.R
R/checks.R
R/consortUI.R
R/contrastV.R
R/customDataset.R
R/data2cor.R
R/dataHelper.R
R/dataSubset.R
R/dataUpload.R
R/dualDrilldown.R
R/filterPanel.R
R/geneV.R
R/getGEO.R
R/getLink.R
R/info.R
R/make.R
R/matchApp.R
R/matchLink.R
R/matchPlot.R
R/matchResult.R
R/matrixApp.R
R/matrixApp2.R
R/matrixAsNetwork.R
R/matrixCtrl.R
R/matrixCtrl2.R
R/matrixMain.R
R/meh.R
R/multiV.R
R/multiVCtrl.R
R/selectV.R
R/sideFilterUI.R
R/spinners.R
R/utils.R
R/xV.R
R/xV_classes.R
README.md
_pkgdown.yml
docs/404.html
docs/articles/MatchApp.html
docs/articles/MatchApp_files/DiagrammeR-styles-0.2/styles.css
docs/articles/MatchApp_files/grViz-binding-1.0.6.1/grViz.js
docs/articles/MatchApp_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/MatchApp_files/viz-1.8.2/viz.js
docs/articles/MatrixApp.html
docs/articles/MatrixApp_files/DiagrammeR-styles-0.2/styles.css
docs/articles/MatrixApp_files/grViz-binding-1.0.6.1/grViz.js
docs/articles/MatrixApp_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/MatrixApp_files/viz-1.8.2/viz.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DIVE.html
docs/reference/asLimmaInput.html
docs/reference/asNegLogAdjP.html
docs/reference/browseR.html
docs/reference/browseServer.html
docs/reference/browseUI.html
docs/reference/cellPack.html
docs/reference/cellPackR.html
docs/reference/cellPackUI.html
docs/reference/checkCohortData.html
docs/reference/checkDataUpload.html
docs/reference/checkForID.html
docs/reference/checkGEOmatrixfile.html
docs/reference/checkGEOmetatype.html
docs/reference/checkGEOplatform.html
docs/reference/checkGEOwrapper.html
docs/reference/cohistPlot.html
docs/reference/colorByClass.html
docs/reference/colorscale_heatmap_custom.html
docs/reference/consortSet.html
docs/reference/consortUI.html
docs/reference/contrastVServer.html
docs/reference/contrastVUI.html
docs/reference/customDatasetInput.html
docs/reference/customDatasetServer.html
docs/reference/customGroupSelect.html
docs/reference/data2cor.html
docs/reference/dataFusion.html
docs/reference/dataHelperServer.html
docs/reference/dataHelperUI.html
docs/reference/dataSubsetInput.html
docs/reference/dataSubsetServer.html
docs/reference/dataUploadServer.html
docs/reference/dataUploadUI.html
docs/reference/dev_mode.html
docs/reference/dualDrilldownServer.html
docs/reference/dualDrilldownUI.html
docs/reference/excludePresent.html
docs/reference/extendLine.html
docs/reference/filter4j.html
docs/reference/fitDesign.html
docs/reference/geneVServer.html
docs/reference/geneVUI.html
docs/reference/getFilterGroup.html
docs/reference/getGEOInput.html
docs/reference/getGEOServer.html
docs/reference/getLinkInput.html
docs/reference/getLinkServer.html
docs/reference/index.html
docs/reference/infoOutput.html
docs/reference/infoServer.html
docs/reference/intermediate.html
docs/reference/limmaWrapper.html
docs/reference/matchApp.html
docs/reference/matchAppServer.html
docs/reference/matchAppUI.html
docs/reference/matchLinkServer.html
docs/reference/matchLinkUI.html
docs/reference/matchPair.html
docs/reference/matchPlotServer.html
docs/reference/matchPlotUI.html
docs/reference/matchResultOutput.html
docs/reference/matchResultServer.html
docs/reference/matrixApp.html
docs/reference/matrixAppServer.html
docs/reference/matrixAppUI.html
docs/reference/matrixAsNetworkServer.html
docs/reference/matrixAsNetworkUI.html
docs/reference/matrixCtrlServer.html
docs/reference/matrixCtrlUI.html
docs/reference/matrixInteractiveServer.html
docs/reference/matrixInteractiveUI.html
docs/reference/matrixMainServer.html
docs/reference/matrixMainUI.html
docs/reference/meh.html
docs/reference/multiVCtrlServer.html
docs/reference/multiVCtrlUI.html
docs/reference/multiVServer.html
docs/reference/multiVUI.html
docs/reference/multiVUIR.html
docs/reference/nest.html
docs/reference/nestD3.html
docs/reference/newDatasetInput.html
docs/reference/newDatasetServer.html
docs/reference/reduceClass.html
docs/reference/refSubsetInput.html
docs/reference/refSubsetServer.html
docs/reference/removeID.html
docs/reference/selectVServer.html
docs/reference/selectVUI.html
docs/reference/sideFilterUI.html
docs/reference/subgroupVServer.html
docs/reference/subgroupVUI.html
docs/reference/xCheckID.html
docs/reference/xFoldChange.html
docs/reference/xVExprs.html
docs/reference/xVServer.html
docs/reference/xVUI.html
inst/info/GEO_module.Rmd
inst/info/cohort_exchange.Rmd
inst/info/ht_upload.Rmd
inst/info/interactive_matrix.Rmd
inst/info/matching_methods.Rmd
inst/info/query_api.Rmd
inst/www/app.css
inst/www/app.js
inst/www/cellpack.css
inst/www/cellpack.js
inst/www/consortUI.css
inst/www/consortUIBinding.js
man/DIVE.Rd
man/asExprsMatrix.Rd
man/asLimmaInput.Rd
man/asNegLogAdjP.Rd
man/cdataMake.Rd
man/checkCohortData.Rd
man/checkDataUpload.Rd
man/checkForID.Rd
man/checkGEOmatrixfile.Rd
man/checkGEOmetatype.Rd
man/checkGEOplatform.Rd
man/checkGEOwrapper.Rd
man/cohistPlot.Rd
man/colAgg.Rd
man/colRange.Rd
man/colUniqueValues.Rd
man/colorscale_heatmap_custom.Rd
man/consortSet.Rd
man/consortUI.Rd
man/contrastVServer.Rd
man/contrastVUI.Rd
man/cordataMake.Rd
man/customDatasetInput.Rd
man/customDatasetServer.Rd
man/customGroupSelect.Rd
man/data2cor.Rd
man/dataFusion.Rd
man/dataHelperServer.Rd
man/dataHelperUI.Rd
man/dataSubsetInput.Rd
man/dataSubsetServer.Rd
man/dataUploadServer.Rd
man/dataUploadUI.Rd
man/defaultIndex.Rd
man/dev_mode.Rd
man/dualDrilldownServer.Rd
man/dualDrilldownUI.Rd
man/excludePresent.Rd
man/filter4j.Rd
man/filterApply.Rd
man/filterPanelServer.Rd
man/filterPanelUI.Rd
man/filterQuo.Rd
man/fitDesign.Rd
man/geneVServer.Rd
man/geneVUI.Rd
man/getFilterGroup.Rd
man/getGEOInput.Rd
man/getGEOServer.Rd
man/getLinkInput.Rd
man/getLinkServer.Rd
man/hdlistMake.Rd
man/hdlistchoicesMake.Rd
man/infoOutput.Rd
man/infoServer.Rd
man/limmaWrapper.Rd
man/matchApp.Rd
man/matchAppServer.Rd
man/matchAppUI.Rd
man/matchLinkServer.Rd
man/matchLinkUI.Rd
man/matchPair.Rd
man/matchPlotServer.Rd
man/matchPlotUI.Rd
man/matchResultOutput.Rd
man/matchResultServer.Rd
man/matrixApp.Rd
man/matrixApp2.Rd
man/matrixApp2Server.Rd
man/matrixApp2UI.Rd
man/matrixAppServer.Rd
man/matrixAppUI.Rd
man/matrixAsNetworkServer.Rd
man/matrixAsNetworkUI.Rd
man/matrixCtrl2Server.Rd
man/matrixCtrl2UI.Rd
man/matrixCtrlServer.Rd
man/matrixCtrlUI.Rd
man/matrixMainServer.Rd
man/matrixMainUI.Rd
man/meh.Rd
man/multiVCtrlServer.Rd
man/multiVCtrlUI.Rd
man/multiVServer.Rd
man/multiVUI.Rd
man/multiVUIR.Rd
man/removeID.Rd
man/selectVServer.Rd
man/selectVUI.Rd
man/sideFilterUI.Rd
man/subsetHiVar.Rd
man/validateRefData.Rd
man/xFoldChange.Rd
man/xVExprs.Rd
man/xVServer.Rd
man/xVUI.Rd
vignettes/.gitignore
vignettes/MatchApp.Rmd
vignettes/MatrixApp.Rmd
vignettes/matchApp.gv
vignettes/matrixApp.gv
vignettes/multiV.gv
