In avucoh/DIVE: Data Integration and Visual Exploration

How do I use the query field?

The mygene.info API is used to make the data more searchable/filterable. The examples below demonstrate queries.

| Example query text | Explanation |-------------------------|-------------------------------------------------------------------------------- |ids=1017,1018 or ids=695,ENSG00000123374 | Use list of NCBI or ENSEMBL gene ids to select genes and corresponding proteins |tumor suppressor | Use keyword or concept to select relevant genes/proteins |name:insulin | Use gene name to select a gene/protein |GO:0030070 | Use Gene Ontology term insulin processing to select genes/proteins |refseq:NM_001798 | Use RNA sequence to select corresponding gene/protein |refseq:NP_439892 | Use protein sequence to select corresponding gene/protein |chrX:151,073,054-151,383,976 | Use genomic range to select genes/proteins (use with or without commas). Note that chrX alone is not a valid query.

You can use AND/OR/NOT boolean operators and grouping to form complicated queries:

Example query text | Operator/grouping -----------------------------------------|--------------------------------------------------------------- tumor AND suppressor | AND operator CDK2 OR BTK | OR operator "tumor suppressor" NOT receptor | NOT operator (interleukin OR insulin) AND receptor | grouping with parentheses

avucoh/DIVE documentation built on Aug. 29, 2023, 6:02 p.m.