loadBed: Load UCSC *.BED files containing empirical data
In awuster/geneAttribution: Identification of candidate genes associated with genetic variation
Description
Usage
Arguments
Value
Examples
Description
Required *.BED file format (tab-separated): chr start end name (optional column: score).
Sample files supplied with package are limited to chromosome 2.
Usage
1
Arguments
files
A character vector containing *.BED file names
weights
An integer vector containing weighting for each bed file. Optional
Value
A list of GenomicRanges objects containing the data from the *.BED files, with weightings in the score column
Examples
1
2
3
fileName1 <- system.file("extdata", "hiCRegions.b38.bed", package="geneAttribution")
fileName2 <- system.file("extdata", "eqtlHaplotypeBlocks.b38.bed", package="geneAttribution")
loadBed(c(fileName1, fileName2), c(2, 5))
awuster/geneAttribution documentation built on May 11, 2019, 4:11 p.m.
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Description Usage Arguments Value Examples
Description
Required *.BED file format (tab-separated): chr start end name (optional column: score). Sample files supplied with package are limited to chromosome 2.
Usage
1 |
Arguments
files |
A character vector containing *.BED file names |
weights |
An integer vector containing weighting for each bed file. Optional |
Value
A list of GenomicRanges objects containing the data from the *.BED files, with weightings in the score column
Examples
1 2 3 | fileName1 <- system.file("extdata", "hiCRegions.b38.bed", package="geneAttribution")
fileName2 <- system.file("extdata", "eqtlHaplotypeBlocks.b38.bed", package="geneAttribution")
loadBed(c(fileName1, fileName2), c(2, 5))
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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