vartype_count: Counts the number of SNVs and INDELs.
In bahlolab/varpr: Prioritises variants from the merged_collab file
Description
Usage
Arguments
Value
See Also
Examples
Description
vartype_count reads in the REF and ALT variables from the variant file
and counts how many variant "rows" there are with a single base. This should
imply a SNV, although exceptions to this are quite possible (can't think of an
example right now).
Usage
1
vartype_count(vars)
Arguments
vars
The vars file that contains the REF and ALT variables.
Value
A data frame with the counts of SNVs, INDELs and Total.
See Also
Examples
1
2
3
4
## Not run:
vartype_count(vars) # assumes you have a vars data frame
## End(Not run)
bahlolab/varpr documentation built on May 11, 2019, 5:26 p.m.
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Description Usage Arguments Value See Also Examples
Description
vartype_count reads in the REF and ALT variables from the variant file
and counts how many variant "rows" there are with a single base. This should
imply a SNV, although exceptions to this are quite possible (can't think of an
example right now).
Usage
1 | vartype_count(vars)
|
Arguments
vars |
The vars file that contains the REF and ALT variables. |
Value
A data frame with the counts of SNVs, INDELs and Total.
See Also
Examples
1 2 3 4 | ## Not run:
vartype_count(vars) # assumes you have a vars data frame
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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