BeadSorted.Saliva.EPIC.compTable: Cell Proportion Association Table
In bakulskilab/BeadSorted.Saliva.EPIC: Illumina EPIC data on BeadSorted child saliva cells
BeadSorted.Saliva.EPIC.compTable R Documentation
Cell Proportion Association Table
Description
Association of each probe in the Illumina EPIC array with saliva cell type composition.
Format
A data frame with 795694 rows and 7 columns
- probeName
CpG identifier
- t-statistic
test statistic for the t-test between immune and epithelial compositions
- p-value
p-value for the t-test between immune and epithelial compositions
- averageMethylationImmune
average methylation beta value across immune cell samples
- averageMethylationEpithelial
average methylation beta value across epithelial cell samples
- low
minimum methylation beta across all samples
- high
maximum methylation beta across all samples
Examples
library(ExperimentHub)
query(ExperimentHub(), "BeadSorted.Saliva.EPIC.compTable")
BeadSorted.Saliva.EPIC.compTable <- ExperimentHub()[["EH4540"]]
BeadSorted.Saliva.EPIC.compTable
bakulskilab/BeadSorted.Saliva.EPIC documentation built on March 6, 2023, 9:27 a.m.
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| BeadSorted.Saliva.EPIC.compTable | R Documentation |
Cell Proportion Association Table
Description
Association of each probe in the Illumina EPIC array with saliva cell type composition.
Format
A data frame with 795694 rows and 7 columns
- probeName
CpG identifier
- t-statistic
test statistic for the t-test between immune and epithelial compositions
- p-value
p-value for the t-test between immune and epithelial compositions
- averageMethylationImmune
average methylation beta value across immune cell samples
- averageMethylationEpithelial
average methylation beta value across epithelial cell samples
- low
minimum methylation beta across all samples
- high
maximum methylation beta across all samples
Examples
library(ExperimentHub) query(ExperimentHub(), "BeadSorted.Saliva.EPIC.compTable") BeadSorted.Saliva.EPIC.compTable <- ExperimentHub()[["EH4540"]] BeadSorted.Saliva.EPIC.compTable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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