BeadSorted.Saliva.EPIC.estimates: Estimated cell proportion for samples

In bakulskilab/BeadSorted.Saliva.EPIC: Illumina EPIC data on BeadSorted child saliva cells

Estimated cell proportion for samples

Description

Cell-type proportion estimates for each of 60 samples from 22 children. Proportions were estimated using the estimateLC function from the ewastools package.

Usage

BeadSorted.Saliva.EPIC.estimates

Format

A data frame with 60 rows and 4 columns

sampid

Sample identifier

immuneCells

Estimated proportion of immune cells in sample

epithelialCells

Estimate proportion of epithelial cells in sample

See Also

References

1. EA Houseman et al. (2012) DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinformatics 13, 86. doi:10.1186/1471-2105-13-86.

2. ewastools package with implementation for estimating cell-type proportion in saliva using these data

https://github.com/hhhh5/ewastools

bakulskilab/BeadSorted.Saliva.EPIC documentation built on March 6, 2023, 9:27 a.m.