KRVz: KRV test for overall association between host gene expression...
In baolinwu/MiRV: Kernel based independence test for microbiome association studies
Description
Usage
Arguments
Value
References
Description
Broadly applicable to test association between two sets of outcomes. We slightly modify the codes to remove the dependence
on PearsonDS library: simply use the builtin pgamma() function to compute p-value.
Usage
1
KRVz(K, L)
Arguments
K
kernel matrix for a set of outcomes (no need to be centered)
L
kernel matrix for another set of outcomes
Value
KRV p-value
References
Zhan, X., Plantinga, A., Zhao, N., Wu, M.C. (2017). A fast small-sample kernel independence test for microbiome community-level association analysis. Biometrics, DOI: 10.1111/biom.12684.
Original R codes: http://onlinelibrary.wiley.com/wol1/doi/10.1111/biom.12684/suppinfo
Guo,B. and Wu,B. (2017) On the fast small-sample kernel independence test for microbiome community-level association analysis. Biometrics, doi:10.1111/biom.12823.
baolinwu/MiRV documentation built on May 28, 2019, 6:37 p.m.
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Description Usage Arguments Value References
Description
Broadly applicable to test association between two sets of outcomes. We slightly modify the codes to remove the dependence on PearsonDS library: simply use the builtin pgamma() function to compute p-value.
Usage
1 | KRVz(K, L)
|
Arguments
K |
kernel matrix for a set of outcomes (no need to be centered) |
L |
kernel matrix for another set of outcomes |
Value
KRV p-value
References
Zhan, X., Plantinga, A., Zhao, N., Wu, M.C. (2017). A fast small-sample kernel independence test for microbiome community-level association analysis. Biometrics, DOI: 10.1111/biom.12684.
Original R codes: http://onlinelibrary.wiley.com/wol1/doi/10.1111/biom.12684/suppinfo
Guo,B. and Wu,B. (2017) On the fast small-sample kernel independence test for microbiome community-level association analysis. Biometrics, doi:10.1111/biom.12823.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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