SEIR.n.Age.Classes: Main box/compartment model functions

In barnzilla/no.name: Build Box/Compartment Models Via Excel

Description

Main box/compartment model functions

Usage

seir.n.age.classes(
  file.name,
  sheets.names,
  just.get.functions = FALSE,
  functions.kit = NULL,
  also.get.flows = NULL,
  agegrp.glue = "",
  CTMC.random.seeds = NULL
)

Arguments

file.name	a character element.
sheets.names	a list.
just.get.functions	a logical element (by default, FALSE).
functions.kit	a list containing one or more of the following: $differential.eqns.func, $post.processing.func, $post.processing.companion.kit, $CTMC.eqns.func, $CTMC.eqns.func.companion (by default, NULL).
also.get.flows	a character element (by default, NULL).
agegrp.glue	a character element (by default, an empty character element).
CTMC.random.seeds	an integer vector (by default, NULL).

Value

a list containing the results of the box/compartment model.

Examples

# Get full path to demo model (in Excel workbook)
# that comes with the no.name package
model.1.workbook <- get.path("demo.model.1.xls")

# Define workbook sheet names
sheet.names <- list(
  parms.notime.0d = "Parameters any time any age",
  parms.0d = "Parameters any age",
  parms.1d = "Parameters by Age",
  parms.2d = "Parameters by Age x Age",
  initial.conditions = "Initial conditions",
  model.flow = "Model Specs (not lazy v1)",
  auxiliary.vars = "Intermediate calculations",
  post.processing = "Post Processing Empty"
)

# Fit model with model.flow = "Model Specs (not lazy v1)"
results.1 <- seir.n.age.classes(model.1.workbook, sheet.names)

barnzilla/no.name documentation built on Oct. 14, 2020, 3:25 p.m.