flag: flag Copyright (c) 2019. Kaleido Biosciences. All Rights...

In baynec2/phgrofit: Extracting Physiological Data From Kinetic OD600 and pH Curves

flag Copyright (c) 2019. Kaleido Biosciences. All Rights Reserved

Description

This function was added in order to allow the user to easily flag wells that may have had problematic model fitting.

Usage

flag(phgrofit_output)

Arguments

phgrofit_output

a data frane with modeling information from phgrofit

Value

a data frame with a five columns corresponding to symptoms that may be indicative of poor model fit or weird growth curves

• "negligable growth" TRUE if max OD600 is less than 1.5x the starting od600

• "negative_lag_length" TRUE if the od600_lag_length was calculated to be negative

• "starting_od600_higher_than_max" TRUE if the starting od600 is higher than max od600

• "missing_od600_data" TRUE if 25 percent of the od600 data for a well is missing

• "missing_pH_data" TRUE if 25 percent of the pH data for a well is missing

Examples

## Not run: dataframe_exploring_potential_problems = flag(phgrofit_output)
# if there are no problems an empty data frame will be returned.

baynec2/phgrofit documentation built on March 24, 2024, 7:10 a.m.