bbuchsbaum/fmrireg
R package for the anlysis of fmri data

Package index
Search the bbuchsbaum/fmrireg package
Vignettes
Functions
805
Source code
86
Man pages
239
Home
/
GitHub
/
bbuchsbaum/fmrireg: R package for the anlysis of fmri data
/
API

API for bbuchsbaum/fmrireg
R package for the anlysis of fmri data

Global functions
%||% Man page
.all_symbols_in_call Man page Source code
.checkEVArgs Man page Source code
.correlation_map_common Man page Source code
.event_set Source code
.extract_expr_variables_into_events Man page Source code
.hrf_parse Source code
.make_decon_command_str Source code
.pre_eval_hrf_calls Source code
.sanitizeName Man page Source code
AFNI_BLOCK Source code
AFNI_CSPLIN Source code
AFNI_GAM Source code
AFNI_HRF Man page Source code
AFNI_POLY Source code
AFNI_SIN Source code
AFNI_SPMG1 Source code
AFNI_SPMG2 Source code
AFNI_SPMG3 Source code
AFNI_TENT Source code
AFNI_WAV Source code
AFNI_dmBLOCK Source code
BSpline Man page Source code
EV Man page Source code
FMRIGroupDataset Man page
Fcontrasts Man page Source code
Fcontrasts.convolved_term Man page Source code
Fcontrasts.event_model Source code
Fcontrasts.event_term Man page Source code
HRF Man page Source code
HRF_BSPLINE Man page
HRF_DAGUERRE Man page Source code
HRF_DAGUERRE_BASIS Man page Source code
HRF_GAMMA Man page
HRF_GAUSSIAN Man page
HRF_SPMG1 Man page
HRF_SPMG2 Man page
HRF_SPMG3 Man page
Ident Man page Source code
Poly Man page Source code
ReorderFactor Source code
Standardized Man page Source code
`%||%` Source code
`-.contrast_spec` Source code
afni_baseline_matrix Source code
afni_command_switch Source code
afni_command_switch.afni_stim_file Source code
afni_command_switch.afni_stim_im_times Source code
afni_command_switch.afni_stim_times Source code
afni_hrf Man page Source code
afni_lm Man page Source code
afni_stim_file Source code
afni_stim_im_times Source code
afni_stim_times Source code
afni_trialwise Man page Source code
amplitudes Man page Source code
amplitudes.regressor Man page Source code
arbitrary_chunks Source code
as.character.AFNI_HRF Source code
as.matrix_dataset Man page Source code
as.matrix_dataset.fmri_file_dataset Source code
as.matrix_dataset.fmri_mem_dataset Source code
as.matrix_dataset.matrix_dataset Source code
as_vectors Source code
auto_whiten Source code
baseline Man page Source code
baseline_model Man page Source code
baseline_term Source code
baseline_terms Man page Source code
baseline_terms.fmri_model Source code
beta_stats Source code
block Man page Source code
block_term Source code
blockids Man page Source code
blockids.convolved_term Source code
blockids.event_model Source code
blockids.event_term Source code
blockids.sampling_frame Source code
blocklens Man page Source code
blocklens.event_model Source code
blocklens.fmri_model Source code
blocklens.matrix_dataset Source code
blocklens.sampling_frame Source code
build_afni_stims Source code
build_afni_stims.afni_hrf_convolved_term Source code
build_afni_stims.afni_trialwise_convolved_term Source code
build_afni_stims.convolved_term Source code
build_baseline_stims Source code
build_decon_command Source code
build_event_model Man page Source code
build_event_model_from_spec Man page Source code
cells Man page Source code
cells.baseline_model Man page Source code
cells.convolved_term Source code
cells.covariate_convolved_term Man page Source code
cells.event_factor Man page Source code
cells.event_model Source code
cells.event_term Man page Source code
cells.fmri_model Source code
chunk_iter Source code
chunkwise_lm Source code
chunkwise_lm.fmri_dataset Man page Source code
chunkwise_lm.latent_dataset Source code
chunkwise_rlm Man page Source code
coef.fmri_latent_lm Source code
coef.fmri_lm Man page Source code
columns Source code
columns.BSpline Source code
columns.Ident Source code
columns.Poly Source code
columns.Standardized Source code
columns.event_basis Source code
columns.event_matrix Source code
columns.event_seq Source code
columns.event_set Source code
columns.event_term Source code
compute_best_hrfs Man page Source code
compute_residuals_cpp Source code
conditions Man page Source code
conditions.afni_hrf_convolved_term Source code
conditions.afni_trialwise_convolved_term Source code
conditions.baseline_model Source code
conditions.convolved_term Source code
conditions.event_model Source code
conditions.event_term Man page Source code
conditions.fmri_model Source code
conditions.fmri_term Source code
conform_len Source code
construct Source code
construct.afni_hrfspec Source code
construct.afni_trialwise_hrfspec Source code
construct.baselinespec Source code
construct.blockspec Source code
construct.covariatespec Source code
construct.hrfspec Source code
construct.nuisancespec Source code
construct.trialwisespec Source code
construct_block_term Source code
construct_event_model Man page Source code
construct_event_term Source code
construct_event_term_from_spec Man page Source code
construct_model Man page Source code
contrast Man page Source code
contrast_set Man page Source code
contrast_weights Man page Source code
contrast_weights.contrast_diff_spec Man page Source code
contrast_weights.contrast_formula_spec Man page Source code
contrast_weights.convolved_term Man page Source code
contrast_weights.event_model Man page Source code
contrast_weights.fmri_model Man page Source code Source code
contrast_weights.interaction_contrast_spec Man page Source code
contrast_weights.oneway_contrast_spec Man page Source code
contrast_weights.pair_contrast_spec Man page Source code
contrast_weights.poly_contrast_spec Man page Source code
contrast_weights.unit_contrast_spec Man page Source code
convolve Man page Source code
convolve.event_term Man page Source code
convolve_block Man page Source code
convolve_design Man page Source code
convolve_event_term Man page Source code
correlation_map Man page Source code
correlation_map.baseline_model Man page Source code
correlation_map.event_model Man page Source code
correlation_map.fmri_model Man page Source code
covariate Man page Source code
covariate_term Source code
create_event_model Man page Source code
create_fmri_model Man page Source code Source code
create_hrf_object Man page Source code
create_hrfspec Man page Source code
create_parametric_basis Man page Source code
create_parametric_basis_expression Man page Source code
create_subject_baseline Source code
daguerre_basis Source code
data_chunk Source code
data_chunks Man page Source code
data_chunks.fmri_file_dataset Source code
data_chunks.fmri_mem_dataset Man page Source code
data_chunks.matrix_dataset Man page Source code
dctbasis Source code
default_config Source code
design_env Source code
design_env.fmri_model Source code
design_kernel Source code
design_map.baseline_model Man page Source code
design_map.event_model Man page Source code
design_map.fmri_model Man page Source code
design_matrix Man page Source code
design_matrix.afni_hrf_convolved_term Source code
design_matrix.baseline_model Man page Source code
design_matrix.baseline_term Source code
design_matrix.block_term Source code
design_matrix.convolved_term Man page Source code
design_matrix.event_model Man page Source code
design_matrix.event_model_spec Source code
design_matrix.event_term Man page Source code
design_matrix.fmri_model Man page Source code
design_matrix.matrix_term Man page Source code
design_plot Man page Source code
despike Man page Source code
do_fixef Source code
dots Source code
durations Man page Source code
durations.regressor Man page Source code
elements Man page Source code
elements.event_basis Source code
elements.event_matrix Source code
elements.event_seq Source code
elements.event_term Source code
estcon Source code
estcon.contrast Source code
estimate_betas Man page Source code
estimate_betas.fmri_dataset Man page Source code
estimate_betas.latent_dataset Man page Source code
estimate_betas.matrix_dataset Man page Source code
estimate_contrast Source code
estimate_contrast.Fcontrast Source code
estimate_contrast.contrast Source code
estimate_hrf Man page Source code
estimate_r1 Man page Source code
estimate_r1_glms Man page Source code
evaluate Man page Source code
evaluate.HRF Man page Source code
evaluate.hrfspec Source code
evaluate.null_regressor Source code
evaluate.regressor Man page Source code
evaluate.single_trial_regressor Man page Source code
evaluate_regressor Source code
evaluate_regressor_convolution Source code
event_basis Man page Source code
event_factor Man page Source code
event_matrix Man page Source code
event_model Man page Source code
event_model.formula Man page Source code
event_model.list Man page Source code
event_table Man page Source code
event_table.convolved_term Man page Source code
event_table.covariate_convolved_term Source code
event_table.event_term Source code
event_term Man page Source code
event_terms Man page Source code
event_terms.fmri_model Source code
event_variable Man page Source code
exec_strategy Source code
extract_terms Source code
extract_variables Source code
fastevalreg Source code
fastevalreg2 Source code
find_best_hrf Man page Source code
find_best_hrf.fmri_mem_dataset Man page Source code
find_best_hrf.matrix_dataset Man page Source code
fit_Fcontrasts Source code
fit_Ftests Source code
fit_contrasts Source code
fit_lm_contrasts Man page Source code
fitted_hrf Man page Source code
fitted_hrf.fmri_lm Man page Source code
fmri_dataset Man page Source code
fmri_latent_lm Man page Source code
fmri_lm Man page Source code
fmri_lm_fit Man page Source code
fmri_mem_dataset Man page Source code
fmri_model Man page Source code
fmri_rlm Man page Source code
fmrireg Man page
fmrireg-package Man page
formula.event_term Man page Source code
fracridge Man page Source code
fracridge_betas Source code
fracridge_cv Man page Source code
gen_afni_lm Man page Source code
gen_afni_lm.fmri_config Source code
gen_beta_design Source code
gen_empirical_hrf Man page Source code
gen_hrf Man page Source code
gen_hrf_blocked Man page Source code
gen_hrf_lagged Man page Source code
gen_hrf_library Source code
gen_hrf_set Man page Source code
generate_interaction_contrast Source code
generate_main_effect_contrast Source code
getHRF Source code
get_AFNI_HRF Source code
get_col_inds Source code
get_data Source code
get_data.fmri_file_dataset Source code
get_data.fmri_mem_dataset Source code
get_data.latent_dataset Source code
get_data.matrix_dataset Source code
get_data_matrix Source code
get_data_matrix.fmri_file_dataset Source code
get_data_matrix.fmri_mem_dataset Source code
get_data_matrix.matrix_dataset Source code
get_formula Source code
get_formula.fmri_model Man page Source code
get_mask Source code
get_mask.fmri_file_dataset Source code
get_mask.fmri_mem_dataset Source code
get_mask.latent_dataset Source code
get_mask.matrix_dataset Source code
get_methods Source code
get_scan_length Man page Source code
get_scan_tr Man page Source code
global_onsets Man page Source code
global_onsets.sampling_frame Man page
hrf Man page Source code
hrf_blocked Man page
hrf_bspline Man page Source code
hrf_gamma Man page Source code
hrf_gaussian Man page Source code
hrf_half_cosine Man page Source code
hrf_ident Source code
hrf_inv_logit Man page Source code
hrf_lagged Man page
hrf_mexhat Man page Source code
hrf_sine Man page Source code
hrf_smoothing_kernel Man page Source code
hrf_spmg1 Man page Source code
hrf_spmg1_deriv Source code
hrf_spmg1_second_deriv Source code
hrf_time Man page Source code
hrf_toeplitz Man page Source code
hrfspec Source code
inject_basis Source code
instantaneous_correlation Man page Source code
instantaneous_correlation_rcpp Man page Source code Source code
interaction_contrast Man page Source code
is.formula Source code
is.increasing Man page Source code
is.strictly.increasing Man page Source code
is_categorical Man page Source code
is_categorical.event_seq Source code Source code
is_categorical.event_term Source code
is_continuous Man page Source code
is_continuous.event_factor Source code
is_continuous.event_seq Source code
is_continuous.event_term Source code
is_parametric_basis Source code
latent_dataset Man page Source code
levels Man page Source code
levels.BSpline Source code
levels.Ident Source code
levels.Poly Source code
levels.Standardized Source code
levels.event_basis Source code
levels.event_factor Source code
levels.event_matrix Source code
levels.event_set Source code
levels.event_term Source code
levels.event_variable Source code
load_fmri_config Man page Source code
load_subject_events Source code
longnames Man page Source code Source code
longnames.afni_hrf_convolved_term Man page Source code
longnames.convolved_term Man page Source code
longnames.event_model Man page Source code
longnames.event_term Man page Source code
longnames.matrix_term Man page Source code
lss_compute_cpp Source code
lss_compute_r Source code
lss_fast Source code
makeDeriv Source code
makeWeights Source code
make_hrf Source code
matrix_dataset Man page Source code
matrix_term Man page Source code
meta_Fcontrasts Source code
meta_betas Source code
meta_contrasts Source code
meta_fixef Source code
meta_stouffer Source code
mixed_betas Source code
mixed_betas_cpp Source code
mixed_solve_cpp Man page Source code
mixed_solve_internal Source code
multiresponse_bootstrap_lm Man page Source code
multiresponse_lm Man page Source code
multiresponse_rlm Source code
nbasis Man page Source code
nbasis.AFNI_HRF Source code
nbasis.HRF Source code Source code
nbasis.convolved_term Man page Source code
nbasis.covariate_convolved_term Source code
nbasis.hrfspec Man page Source code Source code
nbasis.regressor Source code
neural_input Man page Source code
neural_input.regressor Source code
neural_inputR Source code
neural_input_rcpp Source code
new_best_hrf_result Man page Source code
next_dir_name Source code
nuisance Man page Source code
null_regressor Source code
ols_betas Source code
one_against_all_contrast Man page Source code
one_chunk Source code
oneway_contrast Man page Source code
onsets Man page Source code
onsets.convolved_term Source code
onsets.event_term Source code
onsets.regressor Man page Source code
p_values Man page Source code
pair_contrast Man page Source code
pairwise_contrasts Man page Source code
parent_terms Source code
parent_terms.event_term Source code
parse_term Source code
plot.baseline_model Man page Source code
plot.event_model Man page Source code
plot.fmri_model Source code
plot.regressor Man page Source code
plot_contrasts.event_model Man page Source code
plotly.event_model Source code
pls_betas Source code
pls_global_betas Source code
poly_contrast Man page Source code
predict.BSpline Source code
predict.Ident Source code
predict.Poly Source code
predict.Standardized Source code
predict.fracridge Man page Source code
prediction_matrix Man page Source code
print.BSplineHRF Man page Source code
print.GaussianHRF Man page Source code
print.HRF Man page Source code
print.SPMGHRF Man page Source code
print.afni_hrf_convolved_term Man page
print.afni_lm_spec Source code
print.baseline_model Man page Source code
print.best_hrf_result Man page Source code
print.chunkiter Man page Source code
print.contrast Man page Source code
print.contrast_diff_spec Man page Source code
print.contrast_set Man page Source code
print.contrast_spec Man page Source code
print.convolved_term Man page Source code
print.data_chunk Man page Source code
print.event_factor Man page
print.event_matrix Man page
print.event_model Source code
print.event_term Man page
print.event_variable Man page
print.fmri_config Source code
print.fmri_dataset Source code
print.fmri_lm Man page Source code
print.fmri_model Source code
print.fmri_rlm Man page Source code
print.fmri_term Man page Source code
print.fracridge Man page Source code
print.fracridge_cv Man page Source code
print.latent_dataset Source code
print.poly_contrast_spec Man page Source code
print.regressor Source code
print.sampling_frame Source code
process_confounds Source code
pull_stat Man page Source code
r1_glm_betas Man page Source code
read_and_validate_confounds Source code
read_fmri_config Man page Source code
regressor Man page Source code
regressors Man page Source code
regressors.event_term Source code
rescale_columns_01_to_neg1_pos1 Man page Source code
reshape_coef Man page Source code
ridge_betas Source code
run Source code
run.afni_lm_spec Man page Source code
run_estimate_betas Source code
runwise_lm Man page Source code
runwise_rlm Man page Source code
samples Man page Source code
samples.sampling_frame Man page
sampling_frame Man page Source code
setup_hrf_library Man page Source code
shift Man page Source code
shift.regressor Man page Source code
shortnames Man page Source code
shortnames.convolved_term Man page Source code
shortnames.event_model Man page Source code
shortnames.event_term Man page Source code
shortnames.matrix_term Man page Source code
sim_ts Man page Source code
simulate_fmri Source code
simulate_fmri_dataset Man page Source code
simulate_fmri_noise Man page Source code
single_trial_regressor Man page Source code
slicewise_chunks Source code
slm_betas Source code
smooth_hrf_assignments Man page Source code
soft_threshold Source code
split_by_block Man page Source code
split_by_block.sampling_frame Source code
split_onsets Man page Source code
split_onsets.event_term Man page Source code
sq_inv_ar1 Source code
sq_inv_ar1_by_run Source code
sq_inv_arma Source code
sq_inv_arma_by_run Source code
standard_error Man page Source code
standard_error.fmri_latent_lm Man page Source code
standard_error.fmri_lm Man page Source code
stats Man page Source code
stats.fmri_latent_lm Source code
stats.fmri_lm Man page Source code
sub_basis Man page Source code
sub_basis.BSpline Source code
sub_basis.Ident Source code
sub_basis.Poly Source code
sub_basis.Standardized Source code
term_indices Man page Source code
term_matrices Source code
term_matrices.fmri_model Man page Source code
term_names Source code
term_names.baseline_model Source code
term_names.event_model Source code
terms.baseline_model Man page Source code
terms.event_model Source code
terms.fmri_model Source code
tibble_to_neurovec Source code
to_glt Man page Source code
to_glt.contrast Man page Source code Source code
trialwise Man page Source code
unit_contrast Man page Source code
unpack_chunkwise Man page Source code
validate_confounds Source code
validate_events Source code
validate_hrf_params Man page Source code
validate_subjects Source code
validate_tasks Source code
vec_len Man page Source code
with_package Source code
write_afni_stim Source code
write_afni_stim.afni_stim_file Source code
write_afni_stim.afni_stim_times Source code
write_baseline_mat Source code
write_baseline_mats Source code
write_censor_file Source code
write_glt.glt_contrast Man page Source code
write_glts Source code
write_stim_files Source code
bbuchsbaum/fmrireg documentation built on March 1, 2025, 11:20 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close