Files in bbuchsbaum/fmrireg
R package for the anlysis of fmri data

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DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/afni.R R/all_generic.R

R/all_generic.R.bak

R/ar_utils.R R/autoplot-methods.R R/baseline_model.R R/basis.R R/benchmark_datasets.R R/beta_utils.R R/bootstrap.R R/con_stats.R R/condition_basis_list.R R/contrast.R R/covariate.R R/data_fmri_benchmark_datasets.R R/design_plot.R R/effective_df.R R/event-classes.R R/event_model.R R/event_model_helpers.R R/event_vector.R R/fmri_ar_modeling.R R/fmri_betas.R

R/fmri_dataset.R.bak

R/fmri_latent_lm.R R/fmri_lm_ar_integration.R R/fmri_lm_ar_params.R R/fmri_lm_bootstrap.R R/fmri_lm_chunkwise.R R/fmri_lm_config.R R/fmri_lm_config_wrapper.R R/fmri_lm_context.R R/fmri_lm_contrasts.R R/fmri_lm_effective_df.R R/fmri_lm_integrated_solver.R R/fmri_lm_internal.R R/fmri_lm_methods.R R/fmri_lm_runwise.R R/fmri_lm_runwise_integrated.R R/fmri_lm_solver.R R/fmri_lm_strategies.R R/fmri_model.R R/fmri_model_utils.R R/fmri_robust_fitting.R R/fmridataset-imports.R R/fmrihrf-imports.R R/fmrilm.R

R/fmrilm_new.R.bak

R/fmrireg.R R/fmrirlm.R R/gen_contrast.R R/globals.R R/hrf-formula.R R/hrf_smoothing_kernel.R R/lss.R R/metafuns.R R/mixed_solve.R R/naming-utils.R R/sandwich_variance_doc.R R/simulate.R R/utils-internal.R R/utils_operators.R R/zzz.R README.md README.rmd

_pkgdown.yml

bench/benchmark_evaluate_regressor.R bench/evaluate_regressor_benchmark.pdf bench/evaluate_regressor_cpp_benchmark.pdf

codecov.yml

codemeta.json

data-raw/AR_Modeling.md data-raw/DATASET.R data-raw/Fit_LRU.md data-raw/LM_Refactor.md data-raw/Manifold_Guided-HRF_proposal.md data-raw/Robust_LM.md data-raw/Robust_LM_proposal.md data-raw/Toeplitz_engine.md data-raw/event_model_todo.md

data-raw/fmrireg_cheatsheet.txt

data-raw/fmrireg_cheatsheet_gpt4.1.md data-raw/generate_benchmark_datasets.R data-raw/hrf_refactor.md data-raw/hrf_todo.md

data-raw/hyper_roi_1006.RDS

data-raw/naming_refactoring.md data-raw/naming_refactoring_todo.md data-raw/principles.md data-raw/test_optimal_hrf.R

data/fmri_benchmark_datasets.rda

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experimental/despike.R experimental/find_hrf.R experimental/fmri_group_dataset.R experimental/rank1_estimation.R experimental/test_demo_dat.R experimental/whiten.R

fmrireg.Rproj

fmrireg.code-workspace

fmrireg_0.1.0.tar.gz

inst/extdata/auditory/1005_clust_mask.nii

inst/extdata/auditory/aud_demo_dat.RDS

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-01_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-02_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-03_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-04_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-05_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-06_events.tsv

inst/extdata/config.R

inst/extdata/design_aug.txt

inst/extdata/face_design.txt

inst/extdata/images_study/behavior/design.txt

inst/extdata/images_study/config.R

inst/extdata/images_study/epi/.gitignore

inst/extdata/images_study/epi/aux_data.txt

inst/extdata/images_study/epi/global_mask.nii

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inst/extdata/images_study/epi/nuisance_rscan02.txt

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inst/extdata/phoneme_1006_pcdesign.rds

inst/extdata/video_design.txt

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/ar_whiten.cpp

src/ar_whiten.o

src/fmrireg.so

src/inst_correlation.cpp

src/inst_correlation.o

src/lss.cpp

src/lss.o

src/mixed_solve.cpp

src/mixed_solve.o

src/neural_input.cpp

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test_data/1007_test_design_file.txt

test_data/SOD.R test_data/SOD_attention.R test_data/SOD_betas.R test_data/SOD_subsequent.R test_data/basis.r test_data/betas_est_sim.R

test_data/design_aug.txt

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test_data/hrflib.R

test_data/images_study/behavior/design.txt

test_data/images_study/config.R

test_data/images_study/epi/.gitignore

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test_data/images_study/epi/global_mask.nii

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test_data/images_study/epi/nuisance_rscan02.txt

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test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-01_events.tsv

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test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-06_events.tsv

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test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-09_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-10_events.tsv

test_data/syll/sub-302/sub-302_task-localizer_run-1_events.tsv

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test_data/syll/sub-302/sub-302_task-localizer_run-3_events.tsv

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test_data/syll/sub-302/sub-302_task-repetition_run-4_events.tsv

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test_data/syll/sub-304/sub-304_task-localizer_run-2_events.tsv

test_data/syll/sub-304/sub-304_task-localizer_run-3_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-1_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-2_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-3_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-4_events.tsv

test_data/test_rgcca.R

test_data/testmask.nii

test_data/testscan01.nii

test_data/testscan02.nii

vignettes/a_01_hemodynamic_response.html

vignettes/a_02_regressor.Rmd

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vignettes/a_03_baseline_model.Rmd vignettes/a_04_event_models.Rmd vignettes/a_05_contrasts.Rmd vignettes/a_06_afni.Rmd vignettes/a_07_trialwise.Rmd vignettes/a_08_simulation.Rmd vignettes/a_09_linear_model.Rmd vignettes/a_10_dataset.Rmd

vignettes/a_10_dataset.html

vignettes/benchmark_datasets.Rmd

bbuchsbaum/fmrireg documentation built on June 10, 2025, 8:18 p.m.

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R package for the anlysis of fmri data

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R package for the anlysis of fmri data

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