Files in bbuchsbaum/fmrireg
R package for the anlysis of fmri data

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.Rbuildignore

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.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml

.vscode/settings.json

DESCRIPTION

NAMESPACE

R/RcppExports.R R/afni.R R/all_generic.R R/baseline_model.R R/basis.R R/bootstrap.R R/common.R R/con_stats.R R/contrast.R R/covariate.R R/design_plot.R R/despike.R R/event_model.R R/event_vector.R R/find_hrf.R R/fmri_betas.R R/fmri_dataset.R R/fmri_group_dataset.R R/fmri_latent_lm.R R/fmri_model.R R/fmridsl.R R/fmridsl_builder.R R/fmrilm.R R/fmrinls.R R/fmrireg.R R/fmrirlm.R R/fracridge.R R/gen_contrast.R R/globals.R R/hrf.R R/hrf_smoothing_kernel.R R/lss.R R/metafuns.R R/mixed_solve.R R/rank1_estimation.R R/regressor.R R/sampling_frame.R R/simulate.R R/tmp.R R/whiten.R README.md README.rmd

_pkgdown.yml

codecov.yml

data-raw/DATASET.R

data-raw/fmrireg_dsl.yaml

data-raw/hyper_roi_1006.RDS

data-raw/test_optimal_hrf.R

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fmrireg.Rproj

fmrireg.code-workspace

inst/extdata/auditory/1005_clust_mask.nii

inst/extdata/auditory/aud_demo_dat.RDS

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-01_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-02_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-03_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-04_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-05_events.tsv

inst/extdata/auditory/sub-1005_ses-1_task-speech_run-06_events.tsv

inst/extdata/config.R

inst/extdata/design_aug.txt

inst/extdata/face_design.txt

inst/extdata/images_study/behavior/design.txt

inst/extdata/images_study/config.R

inst/extdata/images_study/epi/.gitignore

inst/extdata/images_study/epi/aux_data.txt

inst/extdata/images_study/epi/global_mask.nii

inst/extdata/images_study/epi/nuisance_rscan01.txt

inst/extdata/images_study/epi/nuisance_rscan02.txt

inst/extdata/images_study/epi/nuisance_rscan03.txt

inst/extdata/images_study/epi/nuisance_rscan04.txt

inst/extdata/images_study/epi/nuisance_rscan05.txt

inst/extdata/images_study/epi/nuisance_rscan06.txt

inst/extdata/phoneme_1006_pcdesign.rds

inst/extdata/video_design.txt

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man/gen_hrf_blocked.Rd man/gen_hrf_lagged.Rd man/gen_hrf_set.Rd man/get_formula.fmri_model.Rd man/get_scan_length.Rd man/get_scan_tr.Rd man/global_onsets.Rd man/global_onsets.sampling_frame.Rd man/grapes-or-or-grapes.Rd man/hrf.Rd man/hrf_bspline.Rd man/hrf_gamma.Rd man/hrf_gaussian.Rd man/hrf_half_cosine.Rd man/hrf_inv_logit.Rd man/hrf_mexhat.Rd man/hrf_sine.Rd man/hrf_smoothing_kernel.Rd man/hrf_spmg1.Rd man/hrf_time.Rd man/hrf_toeplitz.Rd man/instantaneous_correlation.Rd man/instantaneous_correlation_rcpp.Rd man/interaction_contrast.Rd man/is.increasing.Rd man/is.strictly.increasing.Rd man/is_categorical.Rd man/is_continuous.Rd man/latent_dataset.Rd man/levels.Rd man/load_fmri_config.Rd man/longnames.Rd man/matrix_dataset.Rd man/matrix_term.Rd man/mixed_solve_cpp.Rd man/multiresponse_bootstrap_lm.Rd man/multiresponse_lm.Rd man/nbasis.Rd man/neural_input.Rd man/new_best_hrf_result.Rd man/nuisance.Rd man/one_against_all_contrast.Rd man/oneway_contrast.Rd man/onsets.Rd man/p_values.Rd man/pair_contrast.Rd man/pairwise_contrasts.Rd man/plot.baseline_model.Rd man/plot.event_model.Rd man/plot.regressor.Rd man/plot_contrasts.event_model.Rd man/poly_contrast.Rd man/predict.fracridge.Rd man/prediction_matrix.Rd man/print.BSplineHRF.Rd man/print.GaussianHRF.Rd man/print.HRF.Rd man/print.SPMGHRF.Rd man/print.afni_hrf_convolved_term.Rd man/print.baseline_model.Rd man/print.best_hrf_result.Rd man/print.chunkiter.Rd man/print.contrast.Rd man/print.contrast_diff_spec.Rd man/print.contrast_set.Rd man/print.contrast_spec.Rd man/print.convolved_term.Rd man/print.data_chunk.Rd man/print.event_factor.Rd man/print.event_matrix.Rd man/print.event_term.Rd man/print.event_variable.Rd man/print.fmri_lm.Rd man/print.fmri_rlm.Rd man/print.fmri_term.Rd man/print.fracridge.Rd man/print.fracridge_cv.Rd man/print.poly_contrast_spec.Rd man/pull_stat.Rd man/r1_glm_betas.Rd man/read_fmri_config.Rd man/regressor.Rd man/regressors.Rd man/rescale_columns_01_to_neg1_pos1.Rd man/reshape_coef.Rd man/run.afni_lm_spec.Rd man/runwise_lm.Rd man/runwise_rlm.Rd man/samples.Rd man/samples.sampling_frame.Rd man/sampling_frame.Rd man/setup_hrf_library.Rd man/shift.Rd man/shift.regressor.Rd man/shortnames.Rd man/sim_ts.Rd man/simulate_fmri_dataset.Rd man/simulate_fmri_noise.Rd man/single_trial_regressor.Rd man/smooth_hrf_assignments.Rd man/split_by_block.Rd man/split_onsets.Rd man/split_onsets.event_term.Rd man/standard_error.Rd man/standard_error.fmri_latent_lm.Rd man/standard_error.fmri_lm.Rd man/stats.Rd man/stats.fmri_lm.Rd man/sub_basis.Rd man/term_indices.Rd man/term_matrices.fmri_model.Rd man/terms.baseline_model.Rd man/to_glt.Rd man/to_glt.contrast.Rd man/trialwise.Rd man/unit_contrast.Rd man/unpack_chunkwise.Rd man/validate_hrf_params.Rd man/vec_len.Rd man/write_glt.glt_contrast.Rd oouttakess/event_model_bak.R oouttakess/fmri_model_bak.R oouttakess/fmrinls.R oouttakess/rank1_estimation_bak.R oouttakess/rank1_estimation_glms_bak.R oouttakess/regressor_bak.R oouttakess/showfcontrast.R oouttakess/tmp.R

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/fmrireg.so

src/inst_correlation.cpp

src/inst_correlation.o

src/lss.cpp

src/lss.o

src/mixed_solve.cpp

src/mixed_solve.o

src/neural_input.cpp

src/neural_input.o

test_data/1007_test_design_file.txt

test_data/SOD.R test_data/SOD_attention.R test_data/SOD_betas.R test_data/SOD_subsequent.R test_data/basis.r test_data/betas_est_sim.R

test_data/design_aug.txt

test_data/face_design.txt

test_data/hrflib.R

test_data/images_study/behavior/design.txt

test_data/images_study/config.R

test_data/images_study/epi/.gitignore

test_data/images_study/epi/aux_data.txt

test_data/images_study/epi/global_mask.nii

test_data/images_study/epi/nuisance_rscan01.txt

test_data/images_study/epi/nuisance_rscan02.txt

test_data/images_study/epi/nuisance_rscan03.txt

test_data/images_study/epi/nuisance_rscan04.txt

test_data/images_study/epi/nuisance_rscan05.txt

test_data/images_study/epi/nuisance_rscan06.txt

test_data/latent_betas.R test_data/pc_design.R test_data/pca_recon.R test_data/pca_recon2.R test_data/pca_recon_boot.R test_data/pendregosa.R test_data/phoneme/pca_glm.R

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-01_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-02_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-03_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-04_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-05_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-06_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-07_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-08_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-09_events.tsv

test_data/phoneme/sub-1006/sub-1006_task-phoneme_run-10_events.tsv

test_data/syll/sub-302/sub-302_task-localizer_run-1_events.tsv

test_data/syll/sub-302/sub-302_task-localizer_run-2_events.tsv

test_data/syll/sub-302/sub-302_task-localizer_run-3_events.tsv

test_data/syll/sub-302/sub-302_task-repetition_run-1_events.tsv

test_data/syll/sub-302/sub-302_task-repetition_run-2_events.tsv

test_data/syll/sub-302/sub-302_task-repetition_run-3_events.tsv

test_data/syll/sub-302/sub-302_task-repetition_run-4_events.tsv

test_data/syll/sub-304/sub-304_task-localizer_run-1_events.tsv

test_data/syll/sub-304/sub-304_task-localizer_run-2_events.tsv

test_data/syll/sub-304/sub-304_task-localizer_run-3_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-1_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-2_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-3_events.tsv

test_data/syll/sub-304/sub-304_task-repetition_run-4_events.tsv

test_data/test_rgcca.R

test_data/testmask.nii

test_data/testscan01.nii

test_data/testscan02.nii

bbuchsbaum/fmrireg documentation built on March 1, 2025, 11:20 a.m.

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bbuchsbaum/fmrireg
R package for the anlysis of fmri data

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R package for the anlysis of fmri data

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bbuchsbaum/fmrireg R package for the anlysis of fmri data

Files in bbuchsbaum/fmrireg R package for the anlysis of fmri data

R Package Documentation

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bbuchsbaum/fmrireg
R package for the anlysis of fmri data

Files in bbuchsbaum/fmrireg
R package for the anlysis of fmri data