Man pages for bbuchsbaum/neurosurf
Data structures and visualization for surface-based neuroimaging data

adjacency-methodsGet Adjacency Graph
AFNISurfaceFileDescriptor-classAFNISurfaceFileDescriptor
Arith-methodsArithmetic Operations for NeuroSurface Objects
as.matrix-methodsas.matrix
as-methodsas
as.vector-methodsas.vector
BilatNeuroSurfaceVector-classBilateral NeuroSurface Vector Class
cluster_threshold-methodsApply Cluster-Extent Threshold to Surface Data
ColorMappedNeuroSurfaceColorMappedNeuroSurface
ColorMappedNeuroSurface-classColorMappedNeuroSurface
Compare-methodsComparison Operations for NeuroSurface Objects
conn_comp-methodsCompute Connected Components on a Surface
coords-methodscoords
curvature-methodsCompute Surface Curvature Vector
curv_colsConvert Curvature Values to Binary Colors for Visualization
data_reader-methodsdata_reader
find_all_neighborsFind Node Neighbors in a Surface Mesh
findBoundaries-methodsFind Boundaries Between Regions on a Surface
find_roi_boundariesFind Boundaries of ROIs Defined on a Surface
FreesurferAsciiSurfaceFileDescriptor-classFresurferAsciiSurfaceFileDescriptor
FreesurferBinarySurfaceFileDescriptor-classFresurferBinarySurfaceFileDescriptor
FreeSurferSurfaceGeometryMetaInfo-classFreesurferSurfaceGeometryMetaInfo Class
geometry-methodsExtract Geometry from Surface Object
GIFTISurfaceDataMetaInfo-classGIFTISurfaceDataMetaInfo
GIFTISurfaceFileDescriptor-classGIFTISurfaceFileDescriptor
GIFTISurfaceGeometryMetaInfo-classGIFTISurfaceGeometryMetaInfo
graph-methodsextract 'igraph' object
indices-methodsindices
LabeledNeuroSurface-classLabeledNeuroSurface Class
laplacian-methodsCompute Graph Laplacian
left-methodsGet Left Hemisphere
length-methodslength
load_data-methodsload_data
loadFSSurfaceload Freesurfer ascii surface
meshToGraphConstruct a Graph from Mesh Vertices and Faces
neighbor_graph-methodsConstruct Neighborhood Graph from Surface Mesh
neurosurfneurosurf: Data structures and IO for surface-based...
NeuroSurfaceConstruct a NeuroSurface Object
NeuroSurface-classNeuroSurface
NeuroSurfaceSource-classNeuroSurfaceSource Class
NeuroSurfaceVectorNeuroSurfaceVector
NeuroSurfaceVector-classNeuroSurfaceVector Class
NeuroSurfaceVectorSource-classNeuroSurfaceVectorSource
NIMLSurfaceDataMetaInfo-classNIMLSurfaceDataMetaInfo
NIMLSurfaceFileDescriptor-classNIMLSurfaceFileDescriptor
nodes-methodsExtract Surface Node Numbers
plot_js-methodsPlot Surface as an HTMLWidget
plot-methodsplot a surface
print.SearchlightPrint Method for Searchlight Iterator
projectCoordinatesProject 3D Coordinates onto a Surface and Smooth the Values
RandomSurfaceSearchlightCreate a Random Searchlight iterator for surface mesh
read_freesurfer_annotRead Freesurfer Annotation File
read_meta_inforead_meta_info
read_meta_info-methodsGeneric function to read image meta info given a file and a...
read_surfRead Surface Data from a File
read_surf_dataload surface data and link to 'SurfaceGeometry'
read_surf_data_seqread_surf_data_seq
read_surf_geometryRead Surface Geometry from File
remeshSurfaceRemesh a SurfaceGeometry object
right-methodsGet Right Hemisphere
ROISurfaceCreate an instance of class 'ROISurface'
ROISurface-classROISurface
ROISurfaceVectorCreate an instance of class 'ROISurfaceVector'
ROISurfaceVector-classROISurfaceVector
series-methodsseries
series_roi-methodsseries_roi
show-methodsshow
smooth-methodsGeneric Function for Smoothing a Surface or Associated Data
smooth-NeuroSurface-methodSmooth Data on a NeuroSurface Object
sub-NeuroSurfaceVector-missing-missing-ANY-methodextractor
sub-NeuroSurfaceVector-missing-numeric-ANY-methodextractor
sub-NeuroSurfaceVector-numeric-missing-ANY-methodextractor
sub-NeuroSurfaceVector-numeric-numeric-ANY-methodextractor
sub-ROISurfaceSubset an ROISurface Object
sub-sub-NeuroSurfaceVector-numeric-methodextractor
SurfaceDataMetaInfo-classSurfaceDataMetaInfo
SurfaceDiskCreate a Region on Surface
SurfaceGeometryCreate a SurfaceGeometry Object
SurfaceGeometry-classSurfaceGeometry Class
SurfaceGeometryMetaInfo-classSurfaceGeometryMetaInfo Class
SurfaceGeometrySource-classSurfaceGeometrySource Class
SurfaceSearchlightSurfaceSearchlight
surfwidget-methodsCreate a Surface Widget
surfwidget-shinyShiny bindings for surfwidget
surfwidget-SurfaceGeometry-methodsurfwidget
updateAlphaUpdate Surface Opacity
updateColorMapUpdate Surface Color Map
updateIRangeUpdate Data Intensity Range
updateSurfwidgetConfigUpdate Surfwidget Configuration
updateThresholdUpdate Display Threshold
updateVertexColorsUpdate Vertex Colors
values-methodsvalues
VertexColoredNeuroSurface-classVertexColoredNeuroSurface
VertexData-classVertexData
vertices-methodsExtract Vertices from a Surface Object
view_surfaceDisplay a 3D Brain Surface using RGL
vol_to_surfMap values from a 3D volume to a surface in the same...
write_surf_dataWrite Surface Data to File
bbuchsbaum/neurosurf documentation built on June 10, 2025, 8:22 p.m.