Man pages for bbuchsbaum/neurosurf
Data structures and IO for surface-based neuroimaging data
| adjacency | get adjacency graph |
| AFNISurfaceDataMetaInfo | Constructor for 'AFNISurfaceDataMetaInfo' class |
| AFNISurfaceFileDescriptor-class | AFNISurfaceFileDescriptor |
| as.matrix | convert a 'ROISurfaceVector' to an augmented matrix |
| as-methods | convert from 'NeuroSurface' to 'vector' |
| as.vector-NeuroSurface-method | convert 'NeuroSurface' instance to vector |
| BilatNeuroSurfaceVector-class | BilatNeuroSurfaceVector |
| cluster_threshold | apply a cluster-extent threshold to surface data |
| conn_comp | connected components on a surface |
| coords | coords |
| curvature | compute surface curvature vector |
| curv_cols | convert curvature vector to a set of binary colors |
| data_reader | data_reader |
| find_all_neighbors | find all neighbors in a surface mesh within a radius |
| FreesurferAsciiSurfaceFileDescriptor-class | FresurferAsciiSurfaceFileDescriptor |
| FreesurferBinarySurfaceFileDescriptor-class | FresurferBinarySurfaceFileDescriptor |
| FreesurferSurfaceGeometryMetaInfo | Constructor for 'SurfaceGeometryMetaInfo' class |
| FreeSurferSurfaceGeometryMetaInfo-class | FreeSurferSurfaceGeometryMetaInfo |
| geometry | extract geometry object |
| GIFTISurfaceDataMetaInfo | Constructor for 'GIFTISurfaceDataMetaInfo' class |
| GIFTISurfaceDataMetaInfo-class | GIFTISurfaceDataMetaInfo |
| GIFTISurfaceFileDescriptor-class | GIFTISurfaceFileDescriptor |
| GIFTISurfaceGeometryMetaInfo-class | GIFTISurfaceGeometryMetaInfo |
| graph | extract 'igraph' object |
| indices | indices |
| LabeledNeuroSurface-class | LabeledNeuroSurface |
| laplacian | compute graph laplacian |
| left | get left hemisphere |
| length | length |
| load_data | load a NeuroSurfaceVector |
| loadFSSurface | load Freesurfer ascii surface |
| map_values | map_values |
| meshToGraph | construct a graph from a set of vertices and nodes faces. |
| neighbor_graph | construct neighborhood graph from surface mesh using edge... |
| neurosurf | neurosurf |
| NeuroSurface | NeuroSurface |
| NeuroSurface-class | NeuroSurface |
| NeuroSurfaceSource-class | NeuroSurfaceSource |
| NeuroSurfaceVector | NeuroSurfaceVector |
| NeuroSurfaceVector-class | NeuroSurfaceVector |
| NeuroSurfaceVectorSource-class | NeuroSurfaceVectorSource |
| NIMLSurfaceDataMetaInfo | Constructor for 'NIMLSurfaceDataMetaInfo' class |
| NIMLSurfaceDataMetaInfo-class | NIMLSurfaceDataMetaInfo |
| NIMLSurfaceFileDescriptor-class | NIMLSurfaceFileDescriptor |
| nodes | extract surface node numbers |
| plot | plot a surface |
| RandomSurfaceSearchlight | Create a Random Searchlight iterator for surface mesh using... |
| readAFNISurfaceHeader | readAFNISurfaceHeader |
| read_freesurfer_annot | read a freesurfer annotation file as a 'LabeledNeuroSurface' |
| readFreesurferAsciiGeometry | readFreesurferAsciiGeometry |
| readFreesurferAsciiHeader | readFreesurferAsciiHeader |
| readFreesurferBinaryGeometry | readFreesurferBinaryGeometry |
| readFreesurferBinaryHeader | readFreesurferBinaryHeader |
| read_meta_info | read_meta_info |
| readNIMLSurfaceHeader | readNIMLSurfaceHeader |
| read_surf | read a surface data set |
| read_surf_data | load surface data and link to 'SurfaceGeometry' |
| read_surf_data_seq | read_surf_data_seq |
| read_surf_geometry | read_surf_geometry |
| right | get right hemisphere |
| ROISurface | Create an instance of class 'ROISurface' |
| ROISurface-class | ROISurface |
| ROISurfaceVector | Create an instance of class 'ROISurfaceVector' |
| ROISurfaceVector-class | ROISurfaceVector |
| series | extract a series of values for a surface vector |
| series_roi | series_roi |
| show | show an object |
| smooth | smooth a surface |
| sub-NeuroSurfaceVector-missing-missing-ANY-method | extractor |
| sub-NeuroSurfaceVector-missing-numeric-ANY-method | extractor |
| sub-NeuroSurfaceVector-numeric-missing-ANY-method | extractor |
| sub-NeuroSurfaceVector-numeric-numeric-ANY-method | extractor |
| sub-sub-NeuroSurfaceVector-numeric-method | extractor |
| SurfaceDataMetaInfo | Constructor for 'SurfaceDataMetaInfo' class |
| SurfaceDataMetaInfo-class | SurfaceDataMetaInfo |
| SurfaceDisk | Create a Region on Surface |
| SurfaceGeometry-class | SurfaceGeometry |
| SurfaceGeometryMetaInfo-class | SurfaceGeometryMetaInfo |
| SurfaceGeometrySource-class | SurfaceGeometrySource |
| SurfaceSearchlight | SurfaceSearchlight |
| surf_subset-methods | subset an 'ROISurface' |
| values | values |
| VertexData-class | VertexData |
| vertices | extract vertices from surface |
| view_surface | display a surface via with rgl |
| vol_to_surf | map values from a 3d volume to a surface in the same... |
| write_surf_data | write_surf_data |
