Files in bbuchsbaum/neurosurf

Data structures and IO for surface-based neuroimaging data

.Rbuildignore

.travis.yml

DESCRIPTION

NAMESPACE

R/Arith.R R/IO.R R/ROI.R R/Searchlight.R R/all_class.R R/all_generic.R R/neighborhood.R R/neuro_surface.R R/neurosurf.R R/view_surface.R R/vol_to_surf.R README.Rmd README.md

_pkgdown.yml

codecov.yml

docs/404.html

docs/articles/displaying-surfaces.html

docs/articles/displaying-surfaces_files/CanvasMatrix4-2016/CanvasMatrix.src.js

docs/articles/displaying-surfaces_files/crosstalk-1.0.0/css/crosstalk.css

docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js

docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.js.map

docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js

docs/articles/displaying-surfaces_files/crosstalk-1.0.0/js/crosstalk.min.js.map

docs/articles/displaying-surfaces_files/htmlwidgets-1.5/htmlwidgets.js

docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery-AUTHORS.txt

docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.js

docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.js

docs/articles/displaying-surfaces_files/jquery-1.11.3/jquery.min.map

docs/articles/displaying-surfaces_files/rglWebGL-binding-0.100.30/rglWebGL.js

docs/articles/displaying-surfaces_files/rglwidgetClass-2/rgl.css

docs/articles/displaying-surfaces_files/rglwidgetClass-2/rglClass.src.js

docs/articles/index.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/AFNISurfaceDataMetaInfo.html

docs/reference/AFNISurfaceFileDescriptor-class.html

docs/reference/BilatNeuroSurfaceVector-class.html

docs/reference/FreeSurferSurfaceGeometryMetaInfo-class.html

docs/reference/FreesurferAsciiSurfaceFileDescriptor-class.html

docs/reference/FreesurferBinarySurfaceFileDescriptor-class.html

docs/reference/FreesurferSurfaceGeometryMetaInfo.html

docs/reference/LabeledNeuroSurface-class.html

docs/reference/NIMLSurfaceDataMetaInfo-class.html

docs/reference/NIMLSurfaceDataMetaInfo.html

docs/reference/NIMLSurfaceFileDescriptor-class.html

docs/reference/NeuroSurface-class.html

docs/reference/NeuroSurface.html

docs/reference/NeuroSurfaceSource-class.html

docs/reference/NeuroSurfaceVector-class.html

docs/reference/NeuroSurfaceVector.html

docs/reference/NeuroSurfaceVectorSource-class.html

docs/reference/ROISurface-class.html

docs/reference/ROISurface.html

docs/reference/ROISurfaceVector-class.html

docs/reference/ROISurfaceVector.html

docs/reference/RandomSurfaceSearchlight.html

docs/reference/SurfaceDataMetaInfo-class.html

docs/reference/SurfaceDataMetaInfo.html

docs/reference/SurfaceDisk.html

docs/reference/SurfaceGeometry-class.html

docs/reference/SurfaceGeometryMetaInfo-class.html

docs/reference/SurfaceGeometrySource-class.html

docs/reference/SurfaceSearchlight.html

docs/reference/VertexData-class.html

docs/reference/adjacency-methods.html

docs/reference/adjacency.html

docs/reference/alpha_channel.html

docs/reference/as-methods.html

docs/reference/as.matrix-methods.html

docs/reference/as.vector-NeuroSurface-method.html

docs/reference/blend_colors.html

docs/reference/cluster_threshold-methods.html

docs/reference/cluster_threshold.html

docs/reference/color-conversion.html

docs/reference/conn_comp-NeuroSurfaceVector-method.html

docs/reference/conn_comp-methods.html

docs/reference/coords-methods.html

docs/reference/curv_cols.html

docs/reference/curvature-methods.html

docs/reference/curvature.html

docs/reference/data_reader-methods.html

docs/reference/geometry-methods.html

docs/reference/graph-methods.html

docs/reference/graph.html

docs/reference/hello.html

docs/reference/index.html

docs/reference/indices-methods.html

docs/reference/laplacian-methods.html

docs/reference/laplacian.html

docs/reference/left-methods.html

docs/reference/left.html

docs/reference/length-methods.html

docs/reference/loadFSSurface.html

docs/reference/load_data-methods.html

docs/reference/map_colors.html

docs/reference/map_values-methods.html

docs/reference/meshToGraph.html

docs/reference/neighbor_graph-methods.html

docs/reference/neighbor_graph.html

docs/reference/neurosurf.html

docs/reference/nodes-methods.html

docs/reference/nodes.html

docs/reference/plot-methods.html

docs/reference/readAFNISurfaceHeader.html

docs/reference/readFreesurferAsciiGeometry.html

docs/reference/readFreesurferAsciiHeader.html

docs/reference/readFreesurferBinaryGeometry.html

docs/reference/readFreesurferBinaryHeader.html

docs/reference/readNIMLSurfaceHeader.html

docs/reference/read_freesurfer_annot.html

docs/reference/read_meta_info-methods.html

docs/reference/read_surf.html

docs/reference/read_surf_data.html

docs/reference/read_surf_data_seq.html

docs/reference/read_surf_geometry.html

docs/reference/right.html

docs/reference/series-methods.html

docs/reference/show-NeuroSurface-method.html

docs/reference/show-NeuroSurfaceVector-method.html

docs/reference/show-ROISurface-method.html

docs/reference/show-SurfaceDataMetaInfo-method.html

docs/reference/show-SurfaceGeometry-method.html

docs/reference/show-SurfaceGeometryMetaInfo-method.html

docs/reference/smooth-methods.html

docs/reference/sub-NeuroSurfaceVector-missing-missing-ANY-method.html

docs/reference/sub-NeuroSurfaceVector-missing-numeric-ANY-method.html

docs/reference/sub-NeuroSurfaceVector-numeric-missing-ANY-method.html

docs/reference/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.html

docs/reference/sub-sub-NeuroSurfaceVector-numeric-method.html

docs/reference/surf_subset-methods.html

docs/reference/values-methods.html

docs/reference/vertices-methods.html

docs/reference/vertices.html

docs/reference/vol_to_surf.html

docs/reference/write_surf_data.html

inst/extdata/.DS_Store

inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii

inst/extdata/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz

inst/extdata/fsSchaefer2018_200Parcels_7Networks_order_FSLMNI152_1mm.nii.gz

inst/extdata/fsaverage_SurfVol+orig.BRIK.gz

inst/extdata/fsaverage_SurfVol+orig.HEAD.gz

inst/extdata/rscan01_lh.gii

inst/extdata/rscan01_lh.niml.dset

inst/extdata/rscan01_rh.niml.dset

inst/extdata/std.8_fsaverage_lh.MI.1D

inst/extdata/std.8_fsaverage_lh.spec

inst/extdata/std.8_fsaverage_rh.MI.1D

inst/extdata/std.8_fsaverage_rh.spec

inst/extdata/std.8_lh.inflated.asc

inst/extdata/std.8_lh.pial.asc

inst/extdata/std.8_lh.smoothwm.asc

inst/extdata/std.8_lh.sphere.asc

inst/extdata/std.8_lh.sphere.reg.asc

inst/extdata/std.8_lh.white.asc

inst/extdata/std.8_rh.inflated.asc

inst/extdata/std.8_rh.pial.asc

inst/extdata/std.8_rh.smoothwm.asc

inst/extdata/std.8_rh.sphere.asc

inst/extdata/std.8_rh.sphere.reg.asc

inst/extdata/std.8_rh.white.asc

man/AFNISurfaceDataMetaInfo.Rd man/AFNISurfaceFileDescriptor-class.Rd man/BilatNeuroSurfaceVector-class.Rd man/FreeSurferSurfaceGeometryMetaInfo-class.Rd man/FreesurferAsciiSurfaceFileDescriptor-class.Rd man/FreesurferBinarySurfaceFileDescriptor-class.Rd man/FreesurferSurfaceGeometryMetaInfo.Rd man/GIFTISurfaceDataMetaInfo-class.Rd man/GIFTISurfaceDataMetaInfo.Rd man/GIFTISurfaceFileDescriptor-class.Rd man/GIFTISurfaceGeometryMetaInfo-class.Rd man/LabeledNeuroSurface-class.Rd man/NIMLSurfaceDataMetaInfo-class.Rd man/NIMLSurfaceDataMetaInfo.Rd man/NIMLSurfaceFileDescriptor-class.Rd man/NeuroSurface-class.Rd man/NeuroSurface.Rd man/NeuroSurfaceSource-class.Rd man/NeuroSurfaceVector-class.Rd man/NeuroSurfaceVector.Rd man/NeuroSurfaceVectorSource-class.Rd man/ROISurface-class.Rd man/ROISurface.Rd man/ROISurfaceVector-class.Rd man/ROISurfaceVector.Rd man/RandomSurfaceSearchlight.Rd man/SurfaceDataMetaInfo-class.Rd man/SurfaceDataMetaInfo.Rd man/SurfaceDisk.Rd man/SurfaceGeometry-class.Rd man/SurfaceGeometryMetaInfo-class.Rd man/SurfaceGeometrySource-class.Rd man/SurfaceSearchlight.Rd man/VertexData-class.Rd man/adjacency.Rd man/as-methods.Rd man/as.matrix.Rd man/as.vector-NeuroSurface-method.Rd man/cluster_threshold.Rd man/conn_comp.Rd man/coords.Rd man/curv_cols.Rd man/curvature.Rd man/data_reader.Rd man/find_all_neighbors.Rd man/geometry.Rd man/graph.Rd man/indices.Rd man/laplacian.Rd man/left.Rd man/length.Rd man/loadFSSurface.Rd man/load_data.Rd man/map_values.Rd man/meshToGraph.Rd man/neighbor_graph.Rd man/neurosurf.Rd man/nodes.Rd man/plot.Rd man/readAFNISurfaceHeader.Rd man/readFreesurferAsciiGeometry.Rd man/readFreesurferAsciiHeader.Rd man/readFreesurferBinaryGeometry.Rd man/readFreesurferBinaryHeader.Rd man/readNIMLSurfaceHeader.Rd man/read_freesurfer_annot.Rd man/read_meta_info.Rd man/read_surf.Rd man/read_surf_data.Rd man/read_surf_data_seq.Rd man/read_surf_geometry.Rd man/right.Rd man/series.Rd man/series_roi.Rd man/show.Rd man/smooth.Rd man/sub-NeuroSurfaceVector-missing-missing-ANY-method.Rd man/sub-NeuroSurfaceVector-missing-numeric-ANY-method.Rd man/sub-NeuroSurfaceVector-numeric-missing-ANY-method.Rd man/sub-NeuroSurfaceVector-numeric-numeric-ANY-method.Rd man/sub-sub-NeuroSurfaceVector-numeric-method.Rd man/surf_subset-methods.Rd man/values.Rd man/vertices.Rd man/view_surface.Rd man/vol_to_surf.Rd man/write_surf_data.Rd

neurosurf.Rproj

tests/testthat.R tests/testthat/test_io.R

vignettes/.gitignore

vignettes/displaying-surfaces.Rmd

bbuchsbaum/neurosurf documentation built on April 6, 2021, 10:08 a.m.