as.tfa_metadata: Convert a data frame into an object of class 'tfa_metadata'
In bcm-uga/tfa: Factor Analysis of Temporal Population Genetic Samples
Description
Usage
Arguments
Value
References
See Also
Examples
View source: R/ancestry_coefficients.r
Description
as.tfa_metadata checks the contents of a metadata file for the presence of group and instance IDs,
and it convert the data frame as an object of class tfa_metadata.
Usage
1
as.tfa_metadata(dataframe)
Arguments
dataframe
a dataframe containing metadata for a factor analysis of ancient DNA. The meta
data could contain information on individual ID's, group ID's, country of origin, sample age, etc. Columns
with names 'Instance.ID' and 'Group.ID' are mandatory.
Value
an object of class tfa_metadata
References
François, O., Jay, F. (2020). Factor analysis of ancient DNA samples.
See Also
England_BA, ancestry_coefficients
Examples
1
2
3
4
5
6
7
8
library(tfa)
# Ancient DNA from Bronze Age Great Britain samples
# including Steppe (Yamnaya), hunter gatherers, and early farmers from Anatolia
data(england_ba)
attach(England_BA)
metadata <- as.tfa_metadata(meta)
detach(England_BA)
bcm-uga/tfa documentation built on Aug. 28, 2020, 2:46 p.m.
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Description Usage Arguments Value References See Also Examples
View source: R/ancestry_coefficients.r
Description
as.tfa_metadata checks the contents of a metadata file for the presence of group and instance IDs,
and it convert the data frame as an object of class tfa_metadata.
Usage
1 | as.tfa_metadata(dataframe)
|
Arguments
dataframe |
a dataframe containing metadata for a factor analysis of ancient DNA. The meta data could contain information on individual ID's, group ID's, country of origin, sample age, etc. Columns with names 'Instance.ID' and 'Group.ID' are mandatory. |
Value
an object of class tfa_metadata
References
François, O., Jay, F. (2020). Factor analysis of ancient DNA samples.
See Also
England_BA, ancestry_coefficients
Examples
1 2 3 4 5 6 7 8 | library(tfa)
# Ancient DNA from Bronze Age Great Britain samples
# including Steppe (Yamnaya), hunter gatherers, and early farmers from Anatolia
data(england_ba)
attach(England_BA)
metadata <- as.tfa_metadata(meta)
detach(England_BA)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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