cpmSVA: Apply SVA to cpm-transformed count data
In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios
cpmSVA R Documentation
Apply SVA to cpm-transformed count data
Description
Apply SVA to cpm-transformed count data
Usage
cpmSVA(counts, designMatrix)
Arguments
counts
A matrix of counts
designMatrix
Design matrix
Value
The SV matrix
Examples
exCounts <- matrix(rpois(12000, 10), nrow=2000, ncol=6)
exCounts[1:100, 2:3] <- exCounts[1:100,2:3]+20
exDesign <- model.matrix(~gl(2,3))
cpmSVA(exCounts, designMatrix=exDesign)
bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.
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| cpmSVA | R Documentation |
Apply SVA to cpm-transformed count data
Description
Apply SVA to cpm-transformed count data
Usage
cpmSVA(counts, designMatrix)
Arguments
counts |
A matrix of counts |
designMatrix |
Design matrix |
Value
The SV matrix
Examples
exCounts <- matrix(rpois(12000, 10), nrow=2000, ncol=6)
exCounts[1:100, 2:3] <- exCounts[1:100,2:3]+20
exDesign <- model.matrix(~gl(2,3))
cpmSVA(exCounts, designMatrix=exDesign)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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