dgeTableWithPseudoT: Append dgeTable with pseudo t-statistic
In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios
dgeTableWithPseudoT R Documentation
Append dgeTable with pseudo t-statistic
Description
Append dgeTable with pseudo t-statistic
Usage
dgeTableWithPseudoT(edgeResult, contrast = NULL)
Arguments
edgeResult
An EdgeResult object.
contrast
A character string, or integer index, or NULL, to specify the contrast. If NULL, results of all contrasts are returned.
Value
Similar as dgeTable, a data.frame, but with additional columns df (degree of freedom) and pseudoT.
The pseudo t-statistic is calculated based on the P-value of the likelihood ratio test and the residual degree of freedom by the function qt, and its sign is given by the sign of logFC.
See Also
dgeTablesWithPseudoT, dgeTable
bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.
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| dgeTableWithPseudoT | R Documentation |
Append dgeTable with pseudo t-statistic
Description
Append dgeTable with pseudo t-statistic
Usage
dgeTableWithPseudoT(edgeResult, contrast = NULL)
Arguments
edgeResult |
An |
contrast |
A character string, or integer index, or |
Value
Similar as dgeTable, a data.frame, but with additional columns df (degree of freedom) and pseudoT.
The pseudo t-statistic is calculated based on the P-value of the likelihood ratio test and the residual degree of freedom by the function qt, and its sign is given by the sign of logFC.
See Also
dgeTablesWithPseudoT, dgeTable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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