count.allele: Count allele frequencies

In beibeiJ/SimPhe: Tools to Simulate Phenotype(s) with Epistatic Interaction

Description

Count major and minor allele frequencies.

Usage

count.allele(x, ...)

Arguments

x	a vector of single SNP information (minor allele count for genotype).
...	not used.

Value

a vector with major and minor allele frequency.

Author(s)

Beibei Jiang [e-mail] and Benno Pütz [e-mail]

Examples

maf <- 0.1
x <- sample(0:2, 1000, replace = TRUE, prob = c((1-maf)^2, 2*(1-maf)*maf, maf^2))
table(x)
count.allele(x)

beibeiJ/SimPhe documentation built on May 9, 2019, 4:21 a.m.