Man pages for belleau/methylInheritanceSim
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
| calculateNbDiffCase | Calculate the number of differentially methylated cases. |
| createSampleID | Generate the samples ID for the simulated dataset. |
| dataSimExample | A 'list' containing methylation information used by some... |
| estBetaAlpha | Estimate the alpha parameter of a Beta distribution |
| estBetaBeta | Estimate the beta parameter of a beta distribution |
| fixSeed | Fix seed value. |
| getDiffCase | Get the C/T proportion at a selected site, differentially... |
| getDiffMeth | Identify differentially methylated sites and among those, the... |
| getSim | Simulate the proportion of C/T at each site of synthetic CHR... |
| getSyntheticChr | Create a synthetic chromosome with the CTRL genome |
| methInheritSim-package | methInheritSim: Simulating Whole-Genome Inherited Bisulphite... |
| runOnEachSynCHR | Simulate a multigeneration methylation experiment with... |
| runSim | Simulate a multigeneration methylation experiment with... |
| samplesForChrSynthetic | All samples information, formated by 'methylKit', in a... |
| saveData | Save data created during the simulation |
| simEachGeneration | Simulate a multigeneration methylation experiment with... |
| simInheritance | Simulate a multigenerational methylation experiment with... |
| testIfAlreadyDone | Test if a specific simulation has already be done. |
| validateRunSimDoubleParameters | Parameters validation for the 'runSim' function. Only double... |
| validateRunSimIntegerParameters | Parameters validation for the 'runSim' function. Only integer... |
| validateRunSimLogicalParameters | Parameters validation for the 'runSim' function. Only logical... |
| validateRunSimOtherParameters | Parameters validation for the 'runSim' function. Only... |
| validateRunSimParameters | Parameters validation for the 'runSim' function. |
