Man pages for benharden27/sea
Process and plot data from the Sea Education Association's archive
| check_antimerid | Check to se if crusie track crosses Anti-meridion |
| check_var | Check if variable exists in data frame |
| clean_bad_elg | Cut out bad lines of elg file based on bad nav gps signals |
| cnv_to_csv | Convert a cnv file to a csv file |
| cnv_to_csv_fold | Convert all cnv files in a folder to csv |
| create_gps_dttm | Create a GPS DateTime field |
| extract_bathy | Extract ETOPO5 bathymetry for cruise region |
| find_datasheet | Find the name of a datasheet |
| find_near | Find index of nearest value in vector |
| fix_range | Fix color region |
| format_adcp_odv | Format ADCP Data for ODV inport |
| format_ctd_odv | Format CTD Data for ODV inport |
| format_hourly_odv | Format Hourly Data for ODV inport |
| format_hydro_odv | Format hydrowork file dor ODV |
| format_lon | Convert lon to all pos it cross anti-merid |
| format_neuston_odv | Format Neuston Data for ODV inport |
| format_odv | Format |
| format_surfsamp_odv | Format Surface Data for ODV inport |
| generate_swath | Generate swath for plotting sections |
| get_ctd_meta | Get a vector of a paricular metadata variable from a list of... |
| get_ctd_var | Get a matrix of a paricular variable from a list of oce ctd... |
| grid_section | Grid section data onto a regular dist-depth grid |
| import_odv | Import a txt file to ODV |
| interp_adcp | Interpolate an adcp field to different depths |
| is_sea_struct | Check for existence of standard SEA dataframe organization |
| is_var | check if variable is in data frame |
| kml_to_delim | Convert kml station locations to output coordinates |
| make_base_map | Make a base map object |
| makeFolders | A function that creates the output folders in your home... |
| make_points | Generic generator of geom_points from data |
| make_section | Make a section from a list of CTD objects |
| make_subplots | Creates subplots from list of ggplot objects |
| make_track | Make a cruise track ggplot geom |
| make_vector_lonlat | Turns vectors into lon and lat moved |
| make_vectors | A geom of vector lines |
| max_tension | Find maximum tension for wire files in a folder |
| message_read | Prints message that states which slot is being read |
| opll | Calculate 1 opll(CTD) \itemCTDCTD object created by read.ctd... |
| package_data | Creates standard data structures of SEA data |
| parse_datasheet | Parse a raw datasheet |
| parse_elg_field | Generic parser for fields contained in araw charactor tibble |
| parse_elg_gps | Parse GPS fields from ELG file |
| parse_field | Generic field parser - can be used for all elg and excel... |
| parse_lat | Parse lat from elg file |
| parse_lon | Parse lon from elg file |
| plot_bubble | Make a bubble plot |
| plot_current | Plot surface from an ELG or Hourly file |
| plot_flowthru | Plot flow through data |
| plothydro | Plot Bottle data from Hydrocasts |
| plotmap3sec | Plot CTD sections as map and three panels of T, S and rho |
| plotmapTS | Plot CTD sections as map and two panels of T and S |
| plot_neuston | Plot a neuston tow dataset on a map |
| plotO2flsec | Plot CTD auxilary data sections (fluo/oxygen) as two panels |
| plotRBRtow | Plot section from RBR Tow-Yo data |
| plotSEAbio | Plot biomass distribution from neustron tows data |
| plotSEAbiod | Plot biodiveristy distribution from neustron tows data |
| plotSEAbiodn | Plot biomass boxplot between day and night from neustron tows... |
| plotSEAct | Plots map of cruise track |
| plotSEAcurr | Plot map of currents from hull-mounted ADCP data |
| plotSEAelg | Plot flowthrough data stored in an ELG file |
| plotSEAplastic | Plot plastic distribution from neustron tows data |
| plotSEAsurf | Plot Surface Station data |
| plotSEAwind | Plot map of currents from onboard animometer |
| plot_section | Plot a section |
| plot_section_map | Plot a map of ctd section locations |
| plot_surf | Plot surface station data |
| plot_track | Plots map of cruise track |
| plot_wind | Plot surface wind from an ELG or Hourly file |
| prep_section_adcp | Prepare ADCP data for plotting section |
| prep_section_ctd | Prepare ctd objects to plot as a section |
| prep_section_hydro | Prepare bottle-derived data to plot |
| printTable | Does the final table printing and saving after data has been... |
| read_adcp | Read data from an ADCP file |
| read_adcp_ens | Read ADCP file that is a winADCP output |
| read_adcp_ens_fold | Read all ADCP Ensemble files in a folder and combine |
| read_adcp_fold | Read adcp files from a folder |
| readbioll | Extract just the lat and lon of the neuston tows stored in a... |
| read_cnv_latlon | Read lat and lon from CNV header |
| read_ctd | Read and process CTD data |
| read_ctd_fold | Read all CNV files in a folder |
| readCTDsll | Extract just the lat and lon of the CTD profiles in a CTD... |
| read_datasheet | Generic reader for SEA excel data sheets |
| read_elg | Read in SEA data an ELG event file and return a well... |
| read_hourly | Read in hourly datasheet |
| read_hydrocast | Read a hydrocast datasheet |
| readLatLon | Read lat and Lon from header of CTD CNV file |
| read_neuston | Read in a neuston data sheet |
| readRBRtow | Read data from an RBR used as a Tow-Yo |
| readSEAadcp | Read in adcp data files in the format exported before... |
| readSEAadcp_all | As readSEAadcp, this needs to be updated to instread read... |
| readSEAcsv | Read in SEA data from a CSV file |
| readSEActd | A function that reads in all .cnv files from a directory |
| readSEAelg | Read in SEA data an ELG event file |
| readSEAxls | Read in SEA data from an Excel spreadsheet |
| read_surfsamp | Read Surface Sample Datasheet |
| reg2latlon | Set or get region data for plotting |
| rep_each | Repeat each element of a vector a set amount of times |
| select_data | Select a particular data source from standard data frame |
| set_colormap | Set a colormap |
| set_ll_lim | Create good lon/lat limtis from vector |
| table100Count | Creates 100 count data summary table |
| tableCTD | Creates CTD summary table |
| tableHydro | Creates Hydrocast table |
| tableNeuston | Creates Neuston tow summary table |
| tableSS | Creates surface station summary table |
| tableStatSum | Creates station summary table |
| update_elg | Update ELG data |
| uv_to_wswd | U and V to wind speed and wind direction |
| warning_empty | Produces warning for an empty field |
| warning_mult | Produces warning for multiple name matches |
| wswd_to_uv | Wind speed and direction to U and V |
