process_ctd: Master processing function for ctd data

In benharden27/seaprocess: Onboard Processing of SEA Data Streams

Master processing function for ctd data

Description

Function takes in a filepath to a folder containing the cruise cnv CTD files, reads them in, combines them into one data object and then exports to a comma-separated-file and an odv text file.

Usage

process_ctd(
  ctd_folder,
  cruiseID = NULL,
  csv_folder = "output/csv",
  csv_filename = "ctd.csv",
  odv_folder = "output/odv/ctd",
  odv_filename = "ctd.txt",
  add_cruiseID = TRUE,
  ...
)

Arguments

ctd_folder	filepath to the folder containing ctd cnv files
cruiseID	Optional string specifying cruise ID (i.e. "S301")
csv_folder	The directory path to output the csv file. Set to NULL for no csv output.
csv_filename	The csv filename to output the data
odv_folder	The directory path to output the odv file. Set to NULL for no odv output.
odv_filename	The odv .txt filename to output the data
...	optional arguments passed to read_ctd_fold(). Most likely one you'd set would be the depth_step which is the depth resolution of output data in meters. Default is 1m.
add_cruise_ID	If cruiseID is set, logical to specify whether cruiseID should be appended to beginning of filenames for csv and odv output

benharden27/seaprocess documentation built on June 28, 2023, 7:20 p.m.