cnrmaAffy: quantile normalize nonpolymorphic markers
In benilton/crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
View source: R/cnrma-functions.R
cnrmaAffy R Documentation
quantile normalize nonpolymorphic markers
Description
Quantile normalize nonpolymorphic markers to hapmap reference distribution
Usage
cnrmaAffy(cnSet, seed = 1, verbose = TRUE)
Arguments
cnSet
Object of class CNSet
seed
Random number seed
verbose
Logical.
Value
Returns logical. Normalized intensities are written to the alleleA
ff_matrix stored in the CNSet assayData.
Author(s)
R. Scharpf
See Also
snprmaAffy
benilton/crlmm documentation built on June 10, 2025, 8:13 p.m.
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View source: R/cnrma-functions.R
| cnrmaAffy | R Documentation |
quantile normalize nonpolymorphic markers
Description
Quantile normalize nonpolymorphic markers to hapmap reference distribution
Usage
cnrmaAffy(cnSet, seed = 1, verbose = TRUE)
Arguments
cnSet |
Object of class |
seed |
Random number seed |
verbose |
Logical. |
Value
Returns logical. Normalized intensities are written to the alleleA
ff_matrix stored in the CNSet assayData.
Author(s)
R. Scharpf
See Also
snprmaAffy
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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