snprmaAffy: Quantile normalize intensities for SNPs
In benilton/crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Description
Usage
Arguments
Value
Author(s)
See Also
View source: R/cnrma-functions.R
Description
Quantile normalize intensities for SNPs to a HapMap target
reference distribution
Usage
1
snprmaAffy(cnSet, mixtureSampleSize = 10^5, eps = 0.1, seed = 1, verbose = TRUE)
Arguments
cnSet
Object of class CNSet
mixtureSampleSize
Sample size to be use when fitting the
mixture model.
eps
Stop criteria.
seed
Seed to be used when sampling.
verbose
Logical.
Value
Returns nothing. Normalized intensities are written to files.
Author(s)
R.Scharpf
See Also
benilton/crlmm documentation built on Dec. 27, 2019, 12:12 a.m.
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Description Usage Arguments Value Author(s) See Also
View source: R/cnrma-functions.R
Description
Quantile normalize intensities for SNPs to a HapMap target reference distribution
Usage
1 | snprmaAffy(cnSet, mixtureSampleSize = 10^5, eps = 0.1, seed = 1, verbose = TRUE)
|
Arguments
cnSet |
Object of class |
mixtureSampleSize |
Sample size to be use when fitting the mixture model. |
eps |
Stop criteria. |
seed |
Seed to be used when sampling. |
verbose |
Logical. |
Value
Returns nothing. Normalized intensities are written to files.
Author(s)
R.Scharpf
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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