snprmaAffy: Quantile normalize intensities for SNPs
In benilton/crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
View source: R/cnrma-functions.R
snprmaAffy R Documentation
Quantile normalize intensities for SNPs
Description
Quantile normalize intensities for SNPs to a HapMap target
reference distribution
Usage
snprmaAffy(cnSet, mixtureSampleSize = 10^5, eps = 0.1, seed = 1, verbose = TRUE)
Arguments
cnSet
Object of class CNSet
mixtureSampleSize
Sample size to be use when fitting the
mixture model.
eps
Stop criteria.
seed
Seed to be used when sampling.
verbose
Logical.
Value
Returns nothing. Normalized intensities are written to files.
Author(s)
R.Scharpf
See Also
snprma
benilton/crlmm documentation built on June 10, 2025, 8:13 p.m.
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View source: R/cnrma-functions.R
| snprmaAffy | R Documentation |
Quantile normalize intensities for SNPs
Description
Quantile normalize intensities for SNPs to a HapMap target reference distribution
Usage
snprmaAffy(cnSet, mixtureSampleSize = 10^5, eps = 0.1, seed = 1, verbose = TRUE)
Arguments
cnSet |
Object of class |
mixtureSampleSize |
Sample size to be use when fitting the mixture model. |
eps |
Stop criteria. |
seed |
Seed to be used when sampling. |
verbose |
Logical. |
Value
Returns nothing. Normalized intensities are written to files.
Author(s)
R.Scharpf
See Also
snprma
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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