ABpanel: A panel function for plotting prediction regions and...

In benilton/crlmmOld: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Description

A panel function for plotting prediction regions and log-normalized intensities

Usage

ABpanel(x, y, predictRegion, copyNumber = 0:4, fill, ..., subscripts)

Arguments

x	log-normalized intensities for the A or B allele
y	log-normalized intensities for the A or B allele
predictRegion	A list. See predictionRegion.
copyNumber	Integer vector. Indicates which prediction regions are drawn.
fill	Character or integer vector for coloring the points. Only valid for certain point symbols. See points.
...	Additional arguments to panel.xyplot and lpolygon.
subscripts	See xyplot in the lattice package.

Value

Not applicable

Note

ABpanel can be passed as the argument to panel in the xyplot method for CNSet objects. See the examples in xyplot.

Author(s)

R. Scharpf

See Also

xyplot, panel.xyplot lpolygon

benilton/crlmmOld documentation built on May 12, 2019, 10:59 a.m.