genotypeAffy: Genotype Affymetrix CEL files

Description Usage Arguments Details Value Author(s) See Also

Description

Assign diallelic genotypes at polymorphic markers

Usage

1
genotypeAffy(cnSet, SNRMin = 5, recallMin = 10, recallRegMin = 1000, gender = NULL, badSNP = 0.7, returnParams = TRUE, verbose = TRUE)

Arguments

cnSet

An object of class CNSet

SNRMin

See crlmm

recallMin

See crlmm

recallRegMin

See crlmm

gender

See crlmm

badSNP

See crlmm

returnParams

See crlmm

verbose

Logical.

Details

Wrapper for crlmm genotyping.

Value

Returns logical. SNP genotypes and confidence scores are written to ff_matrix objects.

Author(s)

R.Scharpf

See Also

crlmm, calls, confs


benilton/crlmmOld documentation built on May 12, 2019, 10:59 a.m.