SummarizedExperiment-methods: Methods for SummarizedExperiment objects

In benilton/oligoClasses-release: Classes for high-throughput arrays supported by oligo and crlmm

Description

Methods for SummarizedExperiment.

Usage

## S4 method for signature 'SummarizedExperiment'
baf(object)
## S4 method for signature 'SummarizedExperiment'
chromosome(object,...)
## S4 method for signature 'SummarizedExperiment'
isSnp(object, ...)
## S4 method for signature 'SummarizedExperiment'
lrr(object)

Arguments

object	A SummarizedExperiment object.
...	ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowData.

isSnp returns a logical vector for each marker in rowData indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

SummarizedExperiment

benilton/oligoClasses-release documentation built on May 12, 2019, 11:51 a.m.