SummarizedExperiment-methods: Methods for SummarizedExperiment objects

Description Usage Arguments Details See Also

Description

Methods for SummarizedExperiment.

Usage

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## S4 method for signature 'SummarizedExperiment'
baf(object)
## S4 method for signature 'SummarizedExperiment'
chromosome(object,...)
## S4 method for signature 'SummarizedExperiment'
isSnp(object, ...)
## S4 method for signature 'SummarizedExperiment'
lrr(object)

Arguments

object

A SummarizedExperiment object.

...

ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowData.

isSnp returns a logical vector for each marker in rowData indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

SummarizedExperiment


benilton/oligoClasses-release documentation built on May 11, 2017, 4:19 a.m.