oligoSetExample: An example instance of oligoSnpSet class

In benilton/oligoClasses-release: Classes for high-throughput arrays supported by oligo and crlmm

Description

An example instance of the oligoSnpSet class

Usage

data(oligoSetExample)

Source

Created from the simulated locusLevelData provided in this package.

See Also

locusLevelData

Examples

	## Not run: 
		## 'oligoSetExample' created by the following
		data(locusLevelData)
		oligoSet <- new("oligoSnpSet",
				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
				call=locusLevelData[["genotypes"]],
				callProbability=locusLevelData[["crlmmConfidence"]],
				annotation=locusLevelData[["platform"]],
				genome="hg19")
		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]
	
## End(Not run)
	data(oligoSetExample)
	oligoSet

benilton/oligoClasses-release documentation built on May 12, 2019, 11:51 a.m.