oligoSetExample: An example instance of oligoSnpSet class

Description Usage Source See Also Examples

Description

An example instance of the oligoSnpSet class

Usage

1
data(oligoSetExample)

Source

Created from the simulated locusLevelData provided in this package.

See Also

locusLevelData

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
	## Not run: 
		## 'oligoSetExample' created by the following
		data(locusLevelData)
		oligoSet <- new("oligoSnpSet",
				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
				call=locusLevelData[["genotypes"]],
				callProbability=locusLevelData[["crlmmConfidence"]],
				annotation=locusLevelData[["platform"]],
				genome="hg19")
		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]
	
## End(Not run)
	data(oligoSetExample)
	oligoSet

benilton/oligoClasses-release documentation built on May 11, 2017, 4:19 a.m.