Man pages for benja0x40/MRA.TA
Multi Resolution Analysis of Tiling Arrays

backgroundBiasCorrectionBackground bias correction
backgroundBiasEstimationBackground bias estimation
calc.QiRank based scores
colorstripcolorstrip
combineByFragmentCombine probe measurements by restriction fragments
computeRestrictionMapCompute a restriction map
countProbesPerFragmentCount the number of accepted probes per restriction fragment
domainogramDomainogram visualization
enrichmentQualityBest and worst enrichment levels
enrichmentScoreLog-transformed enrichment scores
_hidden_/kdtree[RESERVED] - Not Documented
_hidden_/kdtree.getDN[RESERVED] - Not Documented
_hidden_/line.ends[RESERVED] - Not Documented
_hidden_/localopt.c[RESERVED] - Not Documented
_hidden_/mean.shift[RESERVED] - Not Documented
_hidden_/new.domain.plot[RESERVED] - Not Documented
_hidden_/plot.kdtree.border[RESERVED] - Not Documented
_hidden_/rotate[RESERVED] - Not Documented
kdtreekd-tree representation of (A,M) values
kdtree.getDNNeighbor selection
localopt.clocal optimization
lowessCorrectionLOWESS based normalization
makeColorsRepresent numerical values by a color vector
matchFragmentsToProbesMatch restriction fragments to microarray probes
matchProbesToFragmentsMatch micro array probes to restriction fragments
mean.shiftMeanshift
new.domain.plotCreate a new multi-resolution plot
normalizeArrayDataNormalize tiling array data
plotDomainsPlot multi-resolution segmentation results
plot.kdtree.bordervisualize the kd-tree structure
plotOptimalSegmentsPlot multi-resolution segmentation results
plotProbeDistanceControlsPlot 4C enrichment versus distance to restriction sites
plotSelectedProbesPlot 4C enrichment versus distance to restriction sites
processArgsExtract command line arguments
readDataRead tabulated text files
segmentationMulti-resolution segmentation
verifyInputFilesCheck input files
visualizationCoordinatesContinuous coordinates for domainogram visualization (x axis)
wSize2yAxisContinuous coordinates for domainogram visualization (y axis)
benja0x40/MRA.TA documentation built on Sept. 30, 2017, 11:16 p.m.