computeRestrictionMap: Compute a restriction map

In benja0x40/MRA.TA: Multi Resolution Analysis of Tiling Arrays

Compute a restriction map

Description

Compute a restriction map

Usage

computeRestrictionMap(genome.seq, enzyme.motif, output.file, seqlist = NULL)

Arguments

genome.seq	DNAStringSet object containing the genome sequence
enzyme.motif	character defining the DNA sequence of enzyme cut sites
output.file	character prefix used to generate output file names.
seqlist	indices of chromosomes to be considered (default = all).

Value

sites	file name with the restriction sites data
fragments	file name with restriction fragments data

Author(s)

Benjamin Leblanc

See Also

matchFragmentsToProbes, matchProbesToFragments, DNAStringSet

benja0x40/MRA.TA documentation built on March 13, 2023, 5:15 a.m.