maldi_average_spectra: Align and average MALDI spectra
In benjbuch/summerrmass: Measure and Analyze MALDI Peaks

Description Usage Arguments Details Value

Default method to align and average MALDI spectra.

maldi_average_spectra(
  object,
  method_baseline = "SNIP",
  method_average = "mean",
  ...,
  final_trim_range = c(0, Inf)
)

`object`	A (list of) `MassSpectrum`.
`method_baseline`	Method for background subtraction. See MALDIquant::removeBaseline.
`method_average`	Method to average replicate measurements. See MALDIquant::averageMassSpectra.
`...`	Arguments passed to `alignSpectra`.
`final_trim_range`	A numeric vector from which the maximum and the minimum value are taken to trim the spectrum to a relevant range.

The baseline of the spectra is removed using method_baseline first, then the spectra aligned using the default parameters of alignSpectra unless other arguments are passed via .... The aligned spectra are averaged and trimmed to final_trim_range.

This method can be substituted/overwritten to adapt specific needs in a pipeline.

A single MassSpectrum.

benjbuch/summerrmass documentation built on Dec. 19, 2021, 8:43 a.m.