Files in benmarwick/pyrater
Estimate Speciation, Extinction, and Preservation Rates
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/hello.R
README.Rmd
README.md
dockerfile
inst/notes.md
man/average_lifespan.Rd
man/average_lifespan_occurrence.Rd
man/diversity_time.Rd
man/extract.ages.Rd
man/hello.Rd
man/lifespan_hist.Rd
man/lifespan_hist_occurrence.Rd
man/lineage_pyrate.Rd
man/occurrence_pyrate.Rd
man/plot_LTT.Rd
man/plot_LTT_occurrence.Rd
man/plot_RTT.Rd
man/shift.points.func.Rd
man/summary_plots.Rd
man/summary_plots_occurrence.Rd
pyrater.Rproj
vignettes/PyRate/PyRate.py
vignettes/PyRate/PyRateContinuous.py
vignettes/PyRate/PyRateContinuousShift.py
vignettes/PyRate/PyRateDES.py
vignettes/PyRate/PyRateMCDD.py
vignettes/PyRate/README.md
vignettes/PyRate/example_files/Carnivores_MCDD.txt
vignettes/PyRate/example_files/DES_input_data/Example1_DES_in_rep1.txt
vignettes/PyRate/example_files/DES_input_data/Example1_DES_in_rep2.txt
vignettes/PyRate/example_files/DES_input_data/Example1_DES_in_rep3.txt
vignettes/PyRate/example_files/DES_input_data/Example2_out_rep1.txt
vignettes/PyRate/example_files/DES_input_data/Example2_out_rep2.txt
vignettes/PyRate/example_files/DES_input_data/Example2_out_rep3.txt
vignettes/PyRate/example_files/DES_input_data/Example_1_minimum_data.txt
vignettes/PyRate/example_files/DES_input_data/Example_1_recent_distributions.txt
vignettes/PyRate/example_files/DES_input_data/Example_2_coordinates.txt
vignettes/PyRate/example_files/DES_input_data/Example_2_recent_coordinates.txt
vignettes/PyRate/example_files/DES_input_data/Example_regions.cpg
vignettes/PyRate/example_files/DES_input_data/Example_regions.dbf
vignettes/PyRate/example_files/DES_input_data/Example_regions.prj
vignettes/PyRate/example_files/DES_input_data/Example_regions.qpj
vignettes/PyRate/example_files/DES_input_data/Example_regions.shp
vignettes/PyRate/example_files/DES_input_data/Example_regions.shx
vignettes/PyRate/example_files/LandPlants_RTT.png
vignettes/PyRate/example_files/PhanerozoicTempSmooth.txt
vignettes/PyRate/example_files/Rhinocerotidae_PyRate.py
vignettes/PyRate/example_files/Ursidae.txt
vignettes/PyRate/example_files/Ursidae_PyRate.py
vignettes/PyRate/example_files/Ursidae_SE.txt
vignettes/PyRate/example_files/Ursidae_bm.txt
vignettes/PyRate/example_files/Ursidae_discrete.txt
vignettes/PyRate/example_files/epochs.txt
vignettes/PyRate/example_files/epochs_q.txt
vignettes/PyRate/example_files/plants_cenozoic_DES.txt
vignettes/PyRate/example_files/temperature.txt
vignettes/PyRate/experimental_code/PyRateContinuousHSP.py
vignettes/PyRate/experimental_code/PyRateContinuousM.py
vignettes/PyRate/experimental_code/PyRateDES-Continuous.py
vignettes/PyRate/experimental_code/PyRateDES-Continuous4V.py
vignettes/PyRate/experimental_code/PyRateDES-ContinuousMM.py
vignettes/PyRate/experimental_code/PyRateDPP.py
vignettes/PyRate/experimental_code/PyRateMBDt.py
vignettes/PyRate/experimental_code/PyRateMCDD-HSP2.py
vignettes/PyRate/experimental_code/PyRateMCDD-HSPmh.py
vignettes/PyRate/experimental_code/PyRateMCDD-HSPts.py
vignettes/PyRate/experimental_code/PyRateMCDD_time_slice.py
vignettes/PyRate/experimental_code/PyRateMigrate.py
vignettes/PyRate/experimental_code/TimeDepExtinction.py
vignettes/PyRate/experimental_code/TimeDepExtinctionWeibulWaitingTime.py
vignettes/PyRate/experimental_code/Weibull_conditional.py
vignettes/PyRate/experimental_code/bd_sampling.py
vignettes/PyRate/experimental_code/fitDistrRootAge.py
vignettes/PyRate/experimental_code/fossil_sampler_from_tree.py
vignettes/PyRate/experimental_code/fossil_sampler_from_tree_loop.py
vignettes/PyRate/experimental_code/fossil_sampler_sim.py
vignettes/PyRate/experimental_code/fossil_sampler_sim_multi_q_scale.py
vignettes/PyRate/pyrate_DES_input_example_script.R
vignettes/PyRate/pyrate_DES_utilities.R
vignettes/PyRate/pyrate_lib/PPmodeltest.py
vignettes/PyRate/pyrate_lib/PyRate_logo1024.png
vignettes/PyRate/pyrate_lib/birthdeath_simulator.py
vignettes/PyRate/pyrate_lib/des_mcmc_lib.py
vignettes/PyRate/pyrate_lib/des_model_lib.py
vignettes/PyRate/pyrate_lib/fastPyRateC/Other/_FastPyRateC.so
vignettes/PyRate/pyrate_lib/fastPyRateC/macOS/_FastPyRateC.so
vignettes/PyRate/pyrate_lib/lib_DD_likelihood.py
vignettes/PyRate/pyrate_lib/lib_updates_priors.py
vignettes/PyRate/pyrate_lib/lib_utilities.py
vignettes/PyRate/pyrate_lib/rtt_plot_bds.py
vignettes/PyRate/pyrate_lib/sum_MCDD.py
vignettes/PyRate/pyrate_utilities.r
vignettes/PyRate/requirements.txt
vignettes/PyRate/tutorials/pyrate_tutorial_1.html
vignettes/PyRate/tutorials/pyrate_tutorial_1.md
vignettes/PyRate/tutorials/pyrate_tutorial_2.html
vignettes/PyRate/tutorials/pyrate_tutorial_2.md
vignettes/data/car_models_tutorial.csv
vignettes/data/pottery_data_tutorial.csv
vignettes/intro_to_pyrater.Rmd
vignettes/palcomms201619-f2.jpg
