readTemplate: Read a template file from disk

In bgbrink/ddPCRclust: Clustering algorithm for ddPCR data

Description

This function reads a template file for ddPCRclust from disk and returns a run template and annotations. Please refer to the vignette for information on how this file need to be formatted.

Usage

readTemplate(template)

Arguments

template

A csv file containing information about the individual ddPCR runs. An example template is provided with this package. For more information, please check the vignette or the repository on github.

Value

annotations	The metatdata provided in the header of the template. It contains four fields: Name The name given to this ddPCR experiment Ch1 Color channel 1 (usually HEX) Ch2 Color channel 2 (usually FAM) descriptions Additional descriptions about this ddPCR experiment (e.g. date, exprimentor, etc.)
template	A parsed dataframe containing the template.

Examples

# Read template
exampleFiles <- list.files(paste0(find.package('ddPCRclust'), '/extdata'), full.names = TRUE)
template <- readTemplate(exampleFiles[9])

bgbrink/ddPCRclust documentation built on Nov. 10, 2019, 7:10 a.m.