readTemplate: Read a template file from disk
In bgbrink/dropClust: Clustering algorithm for ddPCR data

Description Usage Arguments Value Examples

View source: R/ddPCRclust.R

This function reads a template file for ddPCRclust from disk and returns a run template and annotations. Please refer to the vignette for information on how this file need to be formatted.

1	readTemplate(template)

template

A csv file containing information about the individual ddPCR runs. An example template is provided with this package. For more information, please check the vignette or the repository on github.

`annotations`	The metatdata provided in the header of the template. It contains four fields: `Name` The name given to this ddPCR experiment `Ch1` Color channel 1 (usually HEX) `Ch2` Color channel 2 (usually FAM) `descriptions` Additional descriptions about this ddPCR experiment (e.g. date, exprimentor, etc.)
`template`	A parsed dataframe containing the template.

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# Read template
exampleFiles <- list.files(paste0(find.package('ddPCRclust'), '/extdata'), full.names = TRUE)
template <- readTemplate(exampleFiles[9])