construct_data_FN15: Format Fluxnet2015 data.frame

Description Usage Arguments Value

View source: R/fluxnet15_utils.R

Description

Construct data.frame formatted for partitioning from Fluxnet2015 format https://fluxnet.org/data/fluxnet2015-dataset/

Usage

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construct_data_FN15(
  data,
  GPP = "GPP_NT_VUT_USTAR50",
  GPP_sd = "NEE_VUT_USTAR50_RANDUNC",
  Ca = "CO2_F_MDS",
  H = "H_F_MDS",
  LE = "LE_F_MDS",
  LE_QC = "LE_F_MDS_QC",
  LE_sd = "LE_RANDUNC",
  NEE_QC = "NEE_VUT_USTAR50_QC",
  NIGHT = "NIGHT",
  precip = "P",
  Pair = "PA",
  Q = "PPFD_IN",
  Rg = "SW_IN_F_MDS",
  Rg_pot = "SW_IN_POT",
  Tair = "TA_F_MDS",
  ustar = "USTAR",
  VPD = "VPD_F_MDS",
  u = "WS_F"
)

Arguments

data

data frame with column names given by the following arguments.

GPP

photosynthesis data (umol CO2 m-2 s-1).

GPP_sd

photosynthesis uncertainties (umol CO2 m-2 s-1).

Ca

atmospheric CO2 concentration (umol Co2 mol air-1).

H

sensible heat flux (W m-2).

LE

Latent heat flux (W m-2)

LE_QC

quality flag for LE (0 measured, 1 good quality, ...)

LE_sd

uncertainty of LE

NEE_QC

quality flag for NEE (0 measured, 1 good quality, ...)

NIGHT

Flag indicating nighttime interval (1 for night, zero otherwise)

precip

P used if measured (mm per dataset resolution: either hour or half-hour)

Pair

atmospheric pressure (kPa).

Q

photosynthetic active radiation (umol m-2 s-1).

Rg

Shortwave radiation, incoming (W/m2)

Rg_pot

potential Shortwave radiation, incoming (W/m2)

Tair

air temperature (deg C).

ustar

wind friction velocity (m s-1).

VPD

vapor pressure deficit (hPa).

u

wind velocity (m s-1).

Value

data.frame with colums as given by argument names and

timestamp

POSIXct time: end of averaging period

ET

evapotranspiration computed from LE in mm/hour

ET_sd

uncertainty of ET

RH

relative humidity (1/1) computed from VPD and Tair

isnight

boolean TRUE if its nighttime computed from NIGHT

qualtiy_flag

(NEE_QC == 0) & (LE_QC == 0) & is.finite(ET) & is.finite(GPP)


bgctw/etpart documentation built on Dec. 19, 2021, 8:49 a.m.