Description Usage Arguments Value
View source: R/fluxnet15_utils.R
Construct data.frame formatted for partitioning from Fluxnet2015 format https://fluxnet.org/data/fluxnet2015-dataset/
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | construct_data_FN15(
data,
GPP = "GPP_NT_VUT_USTAR50",
GPP_sd = "NEE_VUT_USTAR50_RANDUNC",
Ca = "CO2_F_MDS",
H = "H_F_MDS",
LE = "LE_F_MDS",
LE_QC = "LE_F_MDS_QC",
LE_sd = "LE_RANDUNC",
NEE_QC = "NEE_VUT_USTAR50_QC",
NIGHT = "NIGHT",
precip = "P",
Pair = "PA",
Q = "PPFD_IN",
Rg = "SW_IN_F_MDS",
Rg_pot = "SW_IN_POT",
Tair = "TA_F_MDS",
ustar = "USTAR",
VPD = "VPD_F_MDS",
u = "WS_F"
)
|
data |
data frame with column names given by the following arguments. |
GPP |
photosynthesis data (umol CO2 m-2 s-1). |
GPP_sd |
photosynthesis uncertainties (umol CO2 m-2 s-1). |
Ca |
atmospheric CO2 concentration (umol Co2 mol air-1). |
H |
sensible heat flux (W m-2). |
LE |
Latent heat flux (W m-2) |
LE_QC |
quality flag for LE (0 measured, 1 good quality, ...) |
LE_sd |
uncertainty of LE |
NEE_QC |
quality flag for NEE (0 measured, 1 good quality, ...) |
NIGHT |
Flag indicating nighttime interval (1 for night, zero otherwise) |
precip |
P used if measured (mm per dataset resolution: either hour or half-hour) |
Pair |
atmospheric pressure (kPa). |
Q |
photosynthetic active radiation (umol m-2 s-1). |
Rg |
Shortwave radiation, incoming (W/m2) |
Rg_pot |
potential Shortwave radiation, incoming (W/m2) |
Tair |
air temperature (deg C). |
ustar |
wind friction velocity (m s-1). |
VPD |
vapor pressure deficit (hPa). |
u |
wind velocity (m s-1). |
data.frame with colums as given by argument names and
timestamp |
POSIXct time: end of averaging period |
ET |
evapotranspiration computed from LE in mm/hour |
ET_sd |
uncertainty of ET |
RH |
relative humidity (1/1) computed from VPD and Tair |
isnight |
boolean TRUE if its nighttime computed from NIGHT |
qualtiy_flag |
(NEE_QC == 0) & (LE_QC == 0) & is.finite(ET) & is.finite(GPP) |
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