coefKinresp.default: coefKinresp default

In bgctw/twKinresp: Fitting kinetic models to microbial respiration data

Description

Check the microbial coefficients and translate to original microbial scale.

Usage

## Default S3 method:
coefKinresp(tmp.coef, ...)

Arguments

tmp.coef	coefficients of model fit coef(model) (see details)
...

Details

Functions for acccessing microbial parameters, and their uncertainty bounds.

• Mode, Median, Mean and confidence bounds of microbial fits: kinrespParDist.gnls

• Microbial parameters of single fit: this method (obtained by coef(kinrespGrowthphaseReplicate) or fixef(fitKinrespExperiment))

• Microbial parameters of replicate fits: coefKinrespMatrix (obtained by coef(fitKinrespExperiment))

• Microbial parameters of a list of fits: coefKinresp.kinrespList (obtained by kinrespGrowthphaseExperiment)

• 95% confidenc interval of microbial parameters of a single fit: confintKinresp

• Microbial parameters from beta-form of model fit: calcKinrespCoef

Functions for translating between normal and original scale.

• normalized to original scale: all the methods above.

• original scale to normalized scale: coefKinrespNormStart

coef(model)

Models are fitted in various forms differing by used coefficients. This method recognizes and translates coefficients of the following forms

• beta-form at original scale and at normalized scale

• beta-form excluding beta0 (fixed to 0 see calcKinrespCoef)

• microbial form fit at original and transformed scale.

• microbial form fit with excluding r0 (assuming r0=1)

Author(s)

Thomas Wutzler <[e-mail]>

See Also

twKinresp

bgctw/twKinresp documentation built on May 10, 2019, 2:42 p.m.