lmwScreePlot: Scree Plot
In bgovaerts/LMWiRe: Linear Models for Wide Responses

lmwScreePlot

R Documentation

Scree Plot

Description

Plots barplots of the percentage of variance associated with each principal component and for each matrix effect on the basis of lmwContributions outputs.

Usage

lmwScreePlot(
  resLmwContributions,
  effectNames = NULL,
  nPC = 5,
  theme = theme_bw()
)

Arguments

`resLmwContributions`	A resLmwContributions list from the function `lmwContributions`.
`effectNames`	Names of the effects to be plotted. if `NULL`, all the effects are plotted.
`nPC`	An integer with the number of components to plot.
`theme`	`ggplot` theme

Value

A scree plot (ggplot).

Examples


 data('UCH')
 resLmwModelMatrix = lmwModelMatrix(UCH)
 resLmwEffectMatrices = lmwEffectMatrices(resLmwModelMatrix)
 resASCAE = lmwPcaEffects(resLmwEffectMatrices, method="ASCA-E")
 resLmwContributions = lmwContributions(resASCAE)
 lmwScreePlot(resLmwContributions, effectNames ="Hippurate:Citrate", nPC=4)

bgovaerts/LMWiRe documentation built on Sept. 17, 2022, 12:32 a.m.