Man pages for bgulbis/BGTools
Brian's Functions for Data Tidying and Analysis
| add_rcitation | Add citation for data preparation |
| analyze_data | Analysis of data |
| apache_score | Calculate APACHE-II score |
| calc_lab_runtime | Calculate run times for labs |
| calc_perc_time | Calculate proportion of time above or below a threshold |
| calc_runtime | Calculate the running time for continuous medication data |
| calculate_crcl | Caculate the creatinine clearance |
| calculate_leanbw | Calculate the Lean Body Weight |
| check_pregnant | Check for pregnant patients |
| concat_encounters | Make concatenated list of encounters |
| count_rowsback | Count the number of rows to go back in data frame |
| create_tableone | Create a results table using tableone |
| filter_dates | Filter values to specified date range |
| find_ccs_codes | Lookup ICD9/10 CCS codes by description |
| find_icd_codes | Lookup ICD9/10 codes by description |
| get_rds | Read in RDS files |
| gzip_files | Compress data files |
| icd9_description | Lookup ICD9 code description |
| icd9_lookup | Lookup ICD9 codes from CCS codes |
| icd_description | Lookup ICD9/10 code description |
| icd_lookup | Lookup ICD9/10 codes from CCS codes |
| lab_change | Determine if a lab changed by a set amount within a specific... |
| make_indications | Make warfarin indications |
| make_inr_ranges | Make INR therapeutic ranges |
| med_class_lookup | Lookup medication class by medication generic name |
| med_lookup | Lookup medications by medication class |
| read_data | Read and join data from multiple csv files |
| read_edw_data | Read EDW data from csv files |
| result_docx | Create a results document |
| result_plot | Add a ggplot2 graph to docx object |
| result_regrmod | Create a result table for regression model |
| result_table | Create a results table |
| result_table2 | Create multiple result tables separated by a factor |
| save_rds | Save data in RDS files |
| summarize_cont_meds | Summary calculations for continuous medication data |
| summarize_labs | Summary calculations for lab data |
| tidy_data | Tidy data |
| tidy_diagnosis | Tidy diagnosis codes |
| tidy_icd | Tidy ICD9/10 diagnosis codes |
| tidy_labs | Tidy lab results |
| tidy_locations | Tidy locations |
| tidy_meds_cont | Tidy continuous medications |
| tidy_meds_outpt | Tidy outpatient medications |
| tidy_meds_sched | Tidy scheduled medications |
| tidy_services | Tidy services |
| tidy_vent_times | Tidy vent times |
| ungzip_files | Uncompress data files |
| write_docx | Write docx to Word |
