read_edw_data: Read EDW data from csv files

In bgulbis/BGTools: Brian's Functions for Data Tidying and Analysis

Description

read_edw_data takes a directory and file name and reads in all matching csv files and binds them together into a data frame

Usage

read_edw_data(data.dir, file.name, type = NA, check.distinct = TRUE)

Arguments

data.dir	A character string with the name of the directory containing the data files
file.name	A character string with name of data file or pattern to match
type	An optional character string indicating type of data being tidied
check.distinct	An optional logical, calls distinct on the imported data if TRUE

Details

This function takes a directory and file name and reads in all matching csv files and binds them together into a data frame using read_csv from the readr package.

Valid options for type include: blood, charges, cost, demographics, diagnosis*, encounters, events, home_meds, icd9, icd10, icu_assess, id, labs, locations, measures, meds_continuous, meds_sched, meds_sched_freq, mpp, mrn, orders, patients, problems, procedures**, procedures_icd9, procedures_icd10, radiology, services, surgeries, uop, vent_settings, vent_start, visits, vitals, warfarin

* diagnosis option is deprecated; use icd9 or icd10 instead

** procedures option is deprecated; use procedures_icd9 or procedures_icd10 instead

Value

A data frame (tbl_df)

See Also

read_csv

bgulbis/BGTools documentation built on May 12, 2019, 8:21 p.m.