Man pages for bhklab/CMapBox
| benchmarkDrugResults | Function to benchmark drug repurposing schemes |
| breastCompRes | rankDrugsGwc output data frame |
| cmapTrialInfo | CMAP drug clinical trial info |
| compDrugMethods | Function to compare drug repurposing techniques. |
| connectivityScoreBroad | Function computing connectivity scores between two signatures |
| drugPertEx | Drug perturbation signature example |
| drugResults | rankDrugsGwc output data frame generated from the example |
| geneDataGwc | Differential expression data frame |
| getBenchmarkDrugs | Function to get drugs to use when benchmarking |
| getDrugGeneData | Function to generate heatmaps that show a drugs influence on... |
| getDrugsImpactOnGenes | Function to generate heatmaps that show a drugs influence on... |
| getSigGeneVolcPlot | Function to determine which genes drove a drugs connectivity... |
| makeVolcPlot | Function to Create a Volcano Plot |
| mapGenes | Function to map gene ids to entrez IDs, gene symbols and... |
| obtainPset | Function to download PSets for analysis (credit to... |
| plotDrugGeneInteraction | Function to determine which genes drove a drugs connectivity... |
| psetSub | A Small L100 Example PharmacoSet |
| rankDrugsGwc | Function to identify drug candidates. |
