obtainPset: Function to download PSets for analysis (credit to...
In bhklab/CMapBox:
Description
Usage
Arguments
Value
Description
The present package requires perturbation datasets (PharmacoSig objects with drug/gene interaction info) to obtain drug lists. These can be obtained
through this function which calls the pharmacoGx::downloadPSet function. Note that if the corresponding pharmacoSet object that was used to create
the pharmacoSig is also obtained it can be used to obtain additional plots that show the impact of the drugs on the individual genes via the seeDrugImpactGenes function
Usage
1
obtainPset(psetName = "CMAP")
Arguments
psetName
The default is "CMAP" but "L1000_compounds" can also be used to obtain the L1000 PharmacoSig object
Value
a PSet object
bhklab/CMapBox documentation built on Nov. 6, 2019, 8:07 p.m.
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Description Usage Arguments Value
Description
The present package requires perturbation datasets (PharmacoSig objects with drug/gene interaction info) to obtain drug lists. These can be obtained through this function which calls the pharmacoGx::downloadPSet function. Note that if the corresponding pharmacoSet object that was used to create the pharmacoSig is also obtained it can be used to obtain additional plots that show the impact of the drugs on the individual genes via the seeDrugImpactGenes function
Usage
1 | obtainPset(psetName = "CMAP")
|
Arguments
psetName |
The default is "CMAP" but "L1000_compounds" can also be used to obtain the L1000 PharmacoSig object |
Value
a PSet object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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