Files in bhklab/MetaGx
R package for meta-analysis of breast cancer gene expressions
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
NAMESPACE
R/allGeneMap.R
R/blueYellow.R
R/checkNames.R
R/create.forest.plot.R
R/create.survival.plot.R
R/createGMT.R
R/datasetMerging.R
R/duplicateFinder.R
R/forestplot.R
R/formatGMT.R
R/get.survival.data.for.plotting.R
R/getBentinkSubtypes.R
R/getHellandSubtypes.R
R/getKonecnySubtypes.R
R/getOvCaData.R
R/getSubtype.R
R/getTothillSubtypes.R
R/getVerhaakSubtypes.R
R/intersectList.R
R/normQuant.R
R/platformMerging.R
R/prerankGSEA.R
R/probeGeneMapping.R
R/setSubtype.R
R/sigScore.R
R/stripWhiteSpace.R
R/subsetDataset.R
R/subtypeAssociation.R
R/subtypeClassification.R
R/subtypeCorrelation.R
R/subtypeSurvival.R
README.md
data/example.rda
data/jetset.hgu133b.rda
inst/CITATION
inst/doc/bcmeta_isdb_data.R
inst/extdata/JCI65833sd1.xls
inst/extdata/MetaGxBreast_publication_dates.txt
inst/extdata/Patient data + GEO coupling for Haibe-Kains.xls
inst/extdata/Supplementary Table 1.xls
inst/extdata/TCGA_489_UE.top1500.txt
inst/extdata/TCGA_samples_classified.csv
inst/extdata/brca.patientselection.config
inst/extdata/datasets.csv
inst/extdata/hgs.patientselection.config
inst/extdata/jnci_JNCI_14_0249_s03.xls
inst/extdata/jnci_JNCI_14_0249_s05.xls
inst/extdata/jnci_JNCI_14_0249_s06.xls
inst/extdata/journal.pone.0018064.s015.XLS
inst/extdata/konecny.unique.entrez.ids.txt
inst/extdata/reproduce.results.patientselection.config
inst/extdata/tothill.clustering.genes.txt
inst/extdata/tothill.supptable.1.classes.txt
inst/extdata/tothill.supptable.2.txt
inst/extdata/tothill.supptable.probes.entrez.txt
man/MetaGx-package.Rd
man/checkNames.Rd
man/datasetMerging.Rd
man/duplicateFinder.Rd
man/getKonecnySubtypes.Rd
man/getTothillSubtypes.Rd
man/getVerhaakSubtypes.Rd
man/intersectList.Rd
man/normQuant.Rd
man/platformMerging.Rd
man/probeGeneMapping.Rd
man/runPipeline.Rd
man/subtypeAssociation.Rd
man/subtypeClassification.Rd
