predictClasses-SurvivalExperiment-GeneFuModel-method: Use a Gene Signature Based Prediciton Model from the 'genefu'...

Description Usage Arguments Details Value

Description

Use a Gene Signature Based Prediciton Model from the genefu Package to Predict Signature Scores for Each Sample.

Usage

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## S4 method for signature 'SurvivalExperiment,GeneFuModel'
predictClasses(object, model, ..., annot = NA)

Arguments

object

A SurvivalExperiment to predict classes for.

model

A GeneFuModel object to predict classes with.

...

Fall through parameters to genefu::sig.score.

annot

A named parameter with annotations mapping from the gene identifiers in the genefu model.

Details

A signature score should be interpreted as unit-less continuous risk predictor.

Value

The SurvivalExperiment passed to the object argument with the genefu_score column added to the objects colData slot.


bhklab/PDATK documentation built on Dec. 27, 2021, 7:46 a.m.